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| Status |
Public on Jul 10, 2024 |
| Title |
Transcriptomic analysis revealed genes involved in response to drought stress in Zizyphus jujuba var. Spinosa |
| Organism |
Ziziphus jujuba var. spinosa |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Through transcriptome sequencing analysis, drought-resistant genes were excavated to lay a foundation for the cultivation of excellent lineage of Zizyphus jujuba var. Spinosa.There were a total of 10136 differential expressed genes were obtained by transcriptome sequencing of the two families No.1 and No.5, among which 5254 genes were up-regulated and 4882 genes were down-regulated.Several gene families related to drought resistance were found, including ERF, bZIP, MYB, WRKY, NAC, ZFP, F-box, HSP, and bHLH.There are 926 entries commented to the Go function.There are 122 metabolic pathways annotated for KEGG function.The results of PCR fluorescence quantitative verification of 19 drought-related genes were consistent with the results of transcriptome sequencing, among which 15 genes were up-regulated in No. 1 family.
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| Overall design |
Transcriptome sequencing was performed on two Zizyphus jujuba var. Spinosa families No. 1 (treatment group) and No. 5 (control group) under drought stress for 15 days.There were 3 biological replicates in each family
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| Contributor(s) |
Dong S, Liu Q, Chen J, Lu J |
| Citation missing |
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| |
| Submission date |
Jul 20, 2021 |
| Last update date |
Jul 10, 2024 |
| Contact name |
Shengjun Dong |
| E-mail(s) |
1996500037@syau.edu.cn
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| Phone |
13898127077
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| Organization name |
Shenyang Agricultural University
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| Street address |
No.120 Dongling Road, Shenhe District, Shenyang, Liaoning Province, P.R.China.
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| City |
Shenyang |
| ZIP/Postal code |
110866 |
| Country |
China |
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| Platforms (1) |
| GPL29421 |
Illumina NovaSeq 6000 (Ziziphus jujuba var. spinosa) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA748347 |
| SRA |
SRP329094 |
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