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Series GSE179143 Query DataSets for GSE179143
Status Public on Jul 01, 2021
Title Areca catechu-(Betel-nut)-induced whole transcriptome changes in a human monocyte cell line that may have relevance to diabetes and obesity; a pilot study
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Betel-nut consumption is the fourth most common addictive habit globally and there is good evidence linking the habit to obesity, type 2 diabetes (T2D) and the metabolic syndrome. The aim of our pilot study was to identify gene expression relevant to obesity, T2D and the metabolic syndrome using a genome-wide transcriptomic approach in a human monocyte cell line incubated with arecoline and its nitrosated products.
 
Overall design 3 THP1 samples treated with Arecoline and 3 samples treated with MNPA
 
Contributor(s) Hitman GA
Citation(s) 34391409
Submission date Jun 29, 2021
Last update date Aug 24, 2021
Contact name Graham A Hitman
E-mail(s) g.a.hitman@qmul.ac.uk
Organization name Queen Mary University of London
Street address 4 Newark St
City London
ZIP/Postal code E1 2AT
Country United Kingdom
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (6)
GSM5410589 ArecolineT6_2_6
GSM5410590 ArecolineT5_2_6
GSM5410591 ArecolineT7_2_6
Relations
BioProject PRJNA742406
SRA SRP326141

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE179143_RAW.tar 397.0 Mb (http)(custom) TAR (of H5, JSON, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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