|
| Status |
Public on Jun 01, 2024 |
| Title |
Quantitative comparison of in vitro and in vivo embryogenesis at a single cell resolution |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Single cell RNA-Seq time-course analysis revealed in vivo mouse gastrulation and in vitro directed differentiation
|
| |
|
| Overall design |
Investigation of transcriptome dynamics of hematopoietic stem cell formation using a combinatorial Runx1/Ly6a reporter system
|
| |
|
| Contributor(s) |
Tan Y, Spangler A, Farid M, Peng D, Cahan P |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R35 GM124725 |
From intra to intercellular regulatory networks that define cell type identity |
JOHNS HOPKINS UNIVERSITY |
Patrick Cahan |
|
| |
| Submission date |
Jun 22, 2021 |
| Last update date |
Jun 01, 2024 |
| Contact name |
Patrick Cahan |
| Organization name |
Johns Hopkins University
|
| Lab |
Cahan lab
|
| Street address |
733 North Broadway, MRB 653
|
| City |
Baltimore |
| State/province |
MD |
| ZIP/Postal code |
21205 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
|
| Samples (14)
|
| GSM5396094 |
E7.5 embryo YT_E7-5-2_S5_L002 |
| GSM5396095 |
E8.25 embryo YT_1_S1_L001 |
| GSM5396096 |
E8.25 embryo YT_1_S1_L002 |
| GSM5396097 |
E8.25 embryo YT_3_S2_L001 |
| GSM5396098 |
E8.25 embryo YT_3_S2_L002 |
| GSM5396099 |
E6.5 embryo YT-E1_S4_L001 |
| GSM5396100 |
E6.5 embryo YT-E1_S4_L002 |
| GSM5396101 |
Multiseq embryoid body experiment for D4-D8 Multiseq1_S1_L001 |
| GSM5396102 |
Multiseq embryoid body experiment for D4-D8 Multiseq1_S1_L002 |
| GSM5396103 |
Multiseq embryoid body experiment for D4-D8 Multiseq2_S3_L001 |
| GSM5396104 |
Multiseq embryoid body experiment for D4-D8 Multiseq2_S3_L002 |
|
| Relations |
| BioProject |
PRJNA740009 |
| SRA |
SRP325099 |
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