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Series GSE17616 Query DataSets for GSE17616
Status Public on Jan 31, 2010
Title A map of open chromatin in human pancreatic islets
Project ENCODE
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Genome binding/occupancy profiling by genome tiling array
Summary High-throughput sequencing of genomic regions isolated using FAIRE (Formaldehyde-assisted isolation of regulatory elements) from three purified pancreatic islet samples

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
 
Overall design Identification of nucleosome-depleted genomic regions in three human pancreatic islet samples

This work was carried out in the laboratories of Jason Lieb and Jorge Ferrer, and was supported in part by a subcontract to J. Lieb from Greg Crawford's ENCODE grant.

Web link http://www.ncbi.nlm.nih.gov/geo/info/ENCODE.html
 
Contributor(s) Gaulton KJ, Nammo T, Pasquali L, Mohlke KL, Lieb JD, Ferrer J
Citation(s) 20118932
BioProject PRJNA63443
Submission date Aug 12, 2009
Last update date Dec 03, 2018
Contact name Kyle Jeffrie Gaulton
Organization name UCSD
Department Pediatrics
Street address 9500 Gilman Drive
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platforms (2)
GPL3514 ENCODE NimbleGen hg17_04252005 tiling array
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
Samples (5)
GSM491290 Islet_FAIRE-seq 3
GSM491291 Islet_FAIRE-seq 1
GSM491292 Islet_FAIRE-seq 2
Relations
SRA SRP001837

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE17616_RAW.tar 596.6 Mb (http)(custom) TAR (of BED, PAIR, WIG)
Processed data provided as supplementary file
Raw data are available in SRA

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