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Series GSE176009 Query DataSets for GSE176009
Status Public on Jun 03, 2021
Title Reelin and Thrombospondin1 regulate cardiomyocyte proliferation through Vldlr
Organisms Mus musculus; Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary We performed RNA-Seq analysis of neoatal rat ventricular cardiomyocytes (NRVCs)which were treated with Reelin,or knocking down Vldlr,Thbs1,or overexpressing Vldlr to investigate the moleclular mechanism of Thbs1/Reelin-Vldlr to regulate cardiomyocyte proliferation.In addition,the day 1mouse cardiomyocytes in Myh6-Cre;Vldlr f/f mice ,Myh6-Cre;Vldlr f/+ mice ,versus Vldlr f/f mice were also performed to explore the fucntion of Vldlr which regulating cardiomyocyte proliferation in vivo.
 
Overall design RNA-Seq analysis of NRVCs which adminstration of Reelin, koncking down Vldlr ,Thbs1,overexpressing Vldlr,2 replicates per group and RNA-Seq analysis of day 1 mouse cardiomyocytes in Myh6-Cre;Vldlr f/f mice, Myh6-Cre;Vldlr f/+ mice and Vldlr f/f mice,3 replicates per group.
 
Contributor(s) Pei L, Zhang H, Wei K
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Submission date Jun 02, 2021
Last update date Jun 03, 2021
Contact name Lijuan Pei
E-mail(s) lijuanpss3@gmail.com
Phone 19802102306
Organization name Tongji University
Street address CHIFENG ROAD 67
City Shanghai
ZIP/Postal code 200082
Country China
 
Platforms (2)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
GPL25947 Illumina NovaSeq 6000 (Rattus norvegicus)
Samples (25)
GSM5352653 si-Control_v rep1
GSM5352654 si-Control_v rep2
GSM5352655 si-Vldlr rep1
Relations
BioProject PRJNA734577
SRA SRP322342

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE176009_Thbs1_gene_count_cpm.txt.gz 452.0 Kb (ftp)(http) TXT
GSE176009_Vldlr_Reelin_gene_count_cpm.txt.gz 1.2 Mb (ftp)(http) TXT
GSE176009_Vldlr_cko_gene_count_cpm.txt.gz 1.1 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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