|
| Status |
Public on Feb 28, 2022 |
| Title |
KDM6B interacts with TFDP1 to activate P53 signalling in regulating mouse palatogenesis |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
The goal of this study is to assess genome-wide chromatin accessibility (ATAC-seq)of palatal tissue at E13.5
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| |
|
| Overall design |
Methods: Sequencing was performed using the NextSeq 500 platform (Illumina) and ATAC-seq reads were aligned to the UCSC mm10 reference genome using BWA-MEN. Then ATAC-seq peaks were called by MACS2 and annotated. Known transcription factor biding motifs were analyzed by HOMER.
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| |
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| Citation(s) |
35212626 |
| |
| Submission date |
May 23, 2021 |
| Last update date |
Apr 20, 2022 |
| Contact name |
Tingwei Guo |
| E-mail(s) |
tingweig@usc.edu
|
| Organization name |
usc
|
| Department |
CCMB
|
| Street address |
2250 Alcazar St
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90033 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
|
| Samples (1) |
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| This SubSeries is part of SuperSeries: |
| GSE175383 |
KDM6B interacts with TFDP1 to activate P53 signalling in regulating mouse palatogenesis |
|
| Relations |
| BioProject |
PRJNA732201 |
| SRA |
SRP321022 |
