|
| Status |
Public on Jun 01, 2021 |
| Title |
Identification of 22 novel susceptibility loci associated with testicular germ cell tumors [ATAC-seq] |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
To investigate the role of the testicular germ cell tumor cells in complex traits, we generated ATAC-seq and Promoter Focused Capture C to gain insight into the gene regulatory arcitecture contacting promoters in an testicular cell line NT2-D1 model of testicular cancer
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| |
|
| Overall design |
We performed ATAC-seq 2102EP, NCCIT, TCAM2, NT2-D1 and Promoter Focused Capture C on NT2-D1 cells.
|
| |
|
| Contributor(s) |
Johnson ME, Grant SF |
| Citation(s) |
34301922 |
| |
| Submission date |
May 23, 2021 |
| Last update date |
Aug 18, 2021 |
| Contact name |
Matthew E. Johnson |
| E-mail(s) |
johnsonm11@email.chop.edu
|
| Phone |
2676345662
|
| Organization name |
Children's Hospital of Philadelphia
|
| Department |
Genetics
|
| Lab |
Dr. Struan Grant
|
| Street address |
3615 Civic Center Boulevard, Abramson Research Center, Suite 1102G
|
| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104-4318 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (12)
|
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| This SubSeries is part of SuperSeries: |
| GSE175368 |
Identification of 22 novel susceptibility loci associated with testicular germ cell tumors |
|
| Relations |
| BioProject |
PRJNA732181 |
| SRA |
SRP321002 |
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