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Series GSE174236 Query DataSets for GSE174236
Status Public on Aug 18, 2021
Title Ascoviruses radically optimize virion proliferation by fully cleaving host cells into viral vesicles that circulate in hemolymph
Organisms Spodoptera frugiperda; Trichoplusia ni
Experiment type Expression profiling by high throughput sequencing
Summary We used RNA-Sequencing technology to analyze the transcriptomes of two ascovirus isolates, SfAV and TnAV, over three weeks.
 
Overall design Spodopetera frugiperda and Trichoplusia ni were infected with one of two ascoviruses, SfAV or TnAV respectively, and host tissue samples were sequenced with RNA-Sequencing technology over time in three replicates.
 
Contributor(s) Zaghloul HA, Hice RH, Arensburger P, Bideshi DK, Federici BA
Citation(s) 34385487
Submission date May 11, 2021
Last update date Aug 18, 2021
Contact name Peter Arensburger
E-mail(s) arensburger@gmail.com
Organization name California State Polytechnic University Pomona
Department Dept. of Biology
Street address 3801 Watkins Avenue
City Pomona
State/province CA
ZIP/Postal code 91768
Country USA
 
Platforms (2)
GPL27985 Illumina NextSeq 500 (Spodoptera frugiperda)
GPL30114 Illumina NextSeq 500 (Trichoplusia ni)
Samples (48)
GSM5289688 Trichoplusia ni somatic samples [F115]
GSM5289689 Trichoplusia ni somatic samples [F116]
GSM5289690 Trichoplusia ni somatic samples [F117]
Relations
BioProject PRJNA728898
SRA SRP319359

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE174236_S1A.xlsx 19.1 Kb (ftp)(http) XLSX
GSE174236_S1B.xlsx 22.1 Kb (ftp)(http) XLSX
GSE174236_S1C.xlsx 25.6 Kb (ftp)(http) XLSX
GSE174236_S1D.xlsx 12.6 Kb (ftp)(http) XLSX
GSE174236_S1E.xlsx 21.7 Kb (ftp)(http) XLSX
GSE174236_S1F.xlsx 12.5 Kb (ftp)(http) XLSX
GSE174236_S1G.xlsx 9.4 Kb (ftp)(http) XLSX
GSE174236_S1H.xlsx 9.6 Kb (ftp)(http) XLSX
GSE174236_S1I.xlsx 6.7 Kb (ftp)(http) XLSX
GSE174236_S1J.xlsx 6.4 Kb (ftp)(http) XLSX
GSE174236_S1K.xlsx 6.4 Kb (ftp)(http) XLSX
GSE174236_S1L.xlsx 6.4 Kb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record
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