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Series GSE173224 Query DataSets for GSE173224
Status Public on Apr 24, 2021
Title Full-length dystrophin restoration via targeted genomic integration by AAV-CRISPR in a humanized mouse model of Duchenne muscular dystrophy
Organism Mus musculus
Experiment type Other
Summary This study applies targeted Cas9-based gene insertion strategies for the correction of full-length dystrophin in a pre-clinical humanized mouse model of Duchenne muscular dystrophy. Following intramuscular or intravenous delivery, full-length dystrophin is restored in skeletal and cardiac muscle.
 
Overall design High-throughput unbiased sequencing to characterize and quantify gene-editing outcomes in genomic DNA and cDNA transcripts of treated mice.
 
Contributor(s) Pickar-Oliver A, Gough V, Bohning JD, Liu S, Robinson-Hamm JN, Daniels H, Majoros WH, Devlin G, Asokan A, Gersbach CA
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Submission date Apr 23, 2021
Last update date Apr 26, 2021
Contact name Adrian Oliver
E-mail(s) adrian.pickar@duke.edu, adrian.pickar@gmail.com
Phone 3016066963
Organization name Duke University
Street address 101 Science Drive, CIEMAS Rm. 2323
City Durham
State/province North Carolina
ZIP/Postal code 27708
Country USA
 
Platforms (2)
GPL16417 Illumina MiSeq (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (186)
GSM5262096 PBS_mouse1_local (gDNA)
GSM5262097 PBS_mouse2_local (gDNA)
GSM5262098 g12_1to1_mouse1_local (gDNA)
Relations
BioProject PRJNA724722
SRA SRP316076

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE173224_RAW.tar 525.2 Mb (http)(custom) TAR (of BAM)
GSE173224_cDNA_matrix_editing_counts.txt.gz 598 b (ftp)(http) TXT
GSE173224_gDNA_matrix_editing_counts.txt.gz 1.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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