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Series GSE172944

Query DataSets for GSE172944

Status

Public on Apr 22, 2021

Title

ATAC-seq from foreskin keratinocyte (ENCSR939WVU)

Project

ENCODE

Organism

Homo sapiens

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ATAC-seq on primary keratinocytes in day 5.0 of differentiation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR939WVU/

Citation(s)

22955616

BioProject

PRJNA63443

Submission date

Apr 21, 2021

Last update date

Aug 03, 2021

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL20301

Illumina HiSeq 4000 (Homo sapiens)

Samples (10)

More...

GSM5259109	ATAC-seq from foreskin keratinocyte (ENCLB771QQE)
GSM5259110	ATAC-seq from foreskin keratinocyte (ENCLB252RPL)
GSM5259111	ATAC-seq from foreskin keratinocyte (ENCLB431NYD)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE172944_ENCFF015BAL_IDR_thresholded_peaks_GRCh38.bed.gz	3.4 Mb	(ftp)(http)	BED
GSE172944_ENCFF051ELV_signal_p-value_GRCh38.bigWig	1.3 Gb	(ftp)(http)	BIGWIG
GSE172944_ENCFF086NUJ_signal_p-value_GRCh38.bigWig	1.4 Gb	(ftp)(http)	BIGWIG
GSE172944_ENCFF113YOG_fold_change_over_control_GRCh38.bigWig	1.7 Gb	(ftp)(http)	BIGWIG
GSE172944_ENCFF200REB_IDR_ranked_peaks_GRCh38.bed.gz	13.2 Mb	(ftp)(http)	BED
GSE172944_ENCFF203SMY_IDR_ranked_peaks_GRCh38.bed.gz	12.5 Mb	(ftp)(http)	BED
GSE172944_ENCFF228WGM_IDR_ranked_peaks_GRCh38.bed.gz	11.0 Mb	(ftp)(http)	BED
GSE172944_ENCFF365HRO_pseudoreplicated_peaks_GRCh38.bigBed	14.3 Mb	(ftp)(http)	BIGBED
GSE172944_ENCFF412ZKG_pseudoreplicated_peaks_GRCh38.bed.gz	5.3 Mb	(ftp)(http)	BED
GSE172944_ENCFF469WUW_signal_p-value_GRCh38.bigWig	2.1 Gb	(ftp)(http)	BIGWIG
GSE172944_ENCFF499YIR_replicated_peaks_GRCh38.bigBed	13.7 Mb	(ftp)(http)	BIGBED
GSE172944_ENCFF518MUM_IDR_thresholded_peaks_GRCh38.bed.gz	3.8 Mb	(ftp)(http)	BED
GSE172944_ENCFF572PSC_IDR_thresholded_peaks_GRCh38.bed.gz	2.8 Mb	(ftp)(http)	BED
GSE172944_ENCFF655MRH_replicated_peaks_GRCh38.bed.gz	6.1 Mb	(ftp)(http)	BED
GSE172944_ENCFF670GHD_IDR_thresholded_peaks_GRCh38.bigBed	7.0 Mb	(ftp)(http)	BIGBED
GSE172944_ENCFF694JKD_conservative_IDR_thresholded_peaks_GRCh38.bigBed	8.2 Mb	(ftp)(http)	BIGBED
GSE172944_ENCFF731PYK_IDR_thresholded_peaks_GRCh38.bigBed	8.9 Mb	(ftp)(http)	BIGBED
GSE172944_ENCFF733WFD_IDR_ranked_peaks_GRCh38.bed.gz	13.0 Mb	(ftp)(http)	BED
GSE172944_ENCFF745GEB_pseudoreplicated_peaks_GRCh38.bigBed	12.4 Mb	(ftp)(http)	BIGBED
GSE172944_ENCFF759JIT_fold_change_over_control_GRCh38.bigWig	2.5 Gb	(ftp)(http)	BIGWIG
GSE172944_ENCFF797ZNH_pseudoreplicated_peaks_GRCh38.bed.gz	5.9 Mb	(ftp)(http)	BED
GSE172944_ENCFF825HZK_pseudoreplicated_peaks_GRCh38.bigBed	13.5 Mb	(ftp)(http)	BIGBED
GSE172944_ENCFF857FVP_pseudoreplicated_peaks_GRCh38.bed.gz	6.3 Mb	(ftp)(http)	BED
GSE172944_ENCFF874MHV_fold_change_over_control_GRCh38.bigWig	1.5 Gb	(ftp)(http)	BIGWIG
GSE172944_ENCFF960OJK_IDR_thresholded_peaks_GRCh38.bigBed	8.2 Mb	(ftp)(http)	BIGBED
GSE172944_ENCFF978LEB_conservative_IDR_thresholded_peaks_GRCh38.bed.gz	3.6 Mb	(ftp)(http)	BED
GSE172944_RAW.tar	30.0 Kb	(http)(custom)	TAR (of TXT)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record