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GEO accession:
Series GSE172613
Query DataSets for GSE172613
Status
Public on Feb 15, 2022
Title
Phenotypic heterogeneity driven by plasticity of the intermediate EMT state governs disease progression and metastasis in breast cancer
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35382559
,
35921406
Submission date
Apr 21, 2021
Last update date
Aug 26, 2022
Contact name
Diwakar Pattabiraman Pattabiraman
E-mail(s)
Diwakar.R.Pattabiraman@Dartmouth.edu
Organization name
Geisel School of Medicine at Dartmouth
Department
Molecular and Systems Biology
Lab
Pattabiraman lab
Street address
1 Medical Center Drive
City
LEBANON
State/province
NH
ZIP/Postal code
03765
Country
USA
Platforms (1)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
Samples (35)
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More...
GSM5258440
Clone M1 replicate 1 (ATAC-seq)
GSM5258441
Clone M1 replicate 2 (ATAC-seq)
GSM5258442
Clone M2 replicate 1 (ATAC-seq)
GSM5258443
Clone M2 replicate 2 (ATAC-seq)
GSM5258444
Clone E replicate 1 (ATAC-seq)
GSM5258445
Clone E replicate 2 (ATAC-seq)
GSM5258446
Clone EM3 replicate 1 (ATAC-seq)
GSM5258447
Clone EM3 replicate 2 (ATAC-seq)
GSM5258448
Clone EM2 replicate 1 (ATAC-seq)
GSM5258449
Clone EM2 replicate 2 (ATAC-seq)
GSM5258450
Clone EM1 replicate 1 (ATAC-seq)
GSM5258451
Clone EM1 replicate 2 (ATAC-seq)
GSM5258452
Parental replicate 1 (ATAC-seq)
GSM5258453
Parental replicate 2 (ATAC-seq)
GSM5258454
Clone E replicate 1 (RNA-seq)
GSM5258455
Clone E replicate 2 (RNA-seq)
GSM5258456
Clone E replicate 3 (RNA-seq)
GSM5258457
Clone EM1 replicate 1 (RNA-seq)
GSM5258458
Clone EM1 replicate 2 (RNA-seq)
GSM5258459
Clone EM1 replicate 3 (RNA-seq)
GSM5258460
Clone EM2 replicate 1 (RNA-seq)
GSM5258461
Clone EM2 replicate 2 (RNA-seq)
GSM5258462
Clone EM2 replicate 3 (RNA-seq)
GSM5258463
Clone EM3 replicate 1 (RNA-seq)
GSM5258464
Clone EM3 replicate 2 (RNA-seq)
GSM5258465
Clone EM3 replicate 3 (RNA-seq)
GSM5258466
Clone M1 replicate 1 (RNA-seq)
GSM5258467
Clone M1 replicate 2 (RNA-seq)
GSM5258468
Clone M1 replicate 3 (RNA-seq)
GSM5258469
Clone M2 replicate 1 (RNA-seq)
GSM5258470
Clone M2 replicate 2 (RNA-seq)
GSM5258471
Clone M2 replicate 3 (RNA-seq)
GSM5258472
Parental replicate 1 (RNA-seq)
GSM5258473
Parental replicate 2 (RNA-seq)
GSM5258474
Parental replicate 3 (RNA-seq)
This SuperSeries is composed of the following SubSeries:
GSE172608
Phenotypic heterogeneity driven by plasticity of the intermediate EMT state governs disease progression and metastasis in breast cancer [ATAC-seq]
GSE172609
Phenotypic heterogeneity driven by plasticity of the intermediate EMT state governs disease progression and metastasis in breast cancer [RNA-seq]
Relations
BioProject
PRJNA723609
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE172613_RAW.tar
1.9 Gb
(http)
(custom)
TAR (of BW, NARROWPEAK, RESULTS)
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