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Series GSE17245 Query DataSets for GSE17245
Status Public on Jul 22, 2009
Title Transcriptome analysis of iron and phosphorus interaction in rice seedlings
Organism Oryza sativa
Experiment type Expression profiling by array
Summary The antagonistic interaction between iron (Fe) and phosphorus (P) has been noted in the area of plant nutrition. To understand the physiology and molecular mechanisms of this interaction, we studied the growth performance, nutrient concentration, and gene expression profiles of root and shoot segments derived from 10-d-old rice (Oryza sativa) seedlings under four different nutrient conditions: (1) full strength of Fe and P (+Fe+P); (2) full strength of P and no Fe (-Fe+P); (3) full strength of Fe and no P (+Fe-P); and (4) without both Fe and P (-Fe-P).
We used Affymetrix genechip to detail the global programme of gene expression underlying different Fe and P supply conditions identified distinct classes of up-regulated genes.
 
Overall design The GeneChip analysis experiment was designed as a two-factor experiment with four treatments: (1) +P+Fe; (2) –Fe+P; (3) +Fe–P; (4) –Fe–P. The experiment included two biological replicates. Each sample represented root and shoot material from five to 10 plants.
 
Contributor(s) Zheng L, Huang F, Narsai R, Wu J, Giraud E, He F, Cheng L, Wang F, Wu P, Whelan J, Shou H
Citation(s) 19605549
Submission date Jul 21, 2009
Last update date Dec 27, 2017
Contact name Luqing Zheng
E-mail(s) zluqing@gmail.com
Organization name Colledge of Life Sciences, Zhejiang University
Street address 388 Yuhangtanghe Road
City Hangzhou
ZIP/Postal code 310058
Country China
 
Platforms (1)
GPL2025 [Rice] Affymetrix Rice Genome Array
Samples (16)
GSM431925 Root- +Fe+P biological rep1
GSM431926 Root- +Fe+P biological rep2
GSM431927 Root- -Fe+P biological rep1
Relations
BioProject PRJNA118951

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE17245_RAW.tar 81.1 Mb (http)(custom) TAR (of CEL, CHP)
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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