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Series GSE172145 Query DataSets for GSE172145
Status Public on Oct 13, 2021
Title The proline and serine rich protein PROSER1 mediates O-GlcNAcylation of TET2 to regulate DNA demethylation on UTX-dependent enhancers and CpG islands.
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 34667079
Submission date Apr 15, 2021
Last update date Nov 10, 2021
Contact name Wojciech Rosikiewicz
E-mail(s) wojciech.rosikiewicz@stjude.org
Phone 901-595-0866
Organization name St. Jude Childrens Research Hospital
Department Center for Applied Bioinformatics
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platforms (3)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (52)
GSM5242630 HEK293-FlpInTREx-control-DSG_122419-INPUT
GSM5242631 HEK293-PROSER1KO1D3-DSG_122419-INPUT
GSM5242632 HEK293-FlpInTREx-control-DSG_122419-H3K4me3-AB8
This SuperSeries is composed of the following SubSeries:
GSE172141 The proline and serine rich protein PROSER1 mediates O-GlcNAcylation of TET2 to regulate DNA demethylation on UTX-dependent enhancers and CpG islands [ChIP-seq]
GSE172142 The proline and serine rich protein PROSER1 mediates O-GlcNAcylation of TET2 to regulate DNA demethylation on UTX-dependent enhancers and CpG islands [hMeDIP-seq]
GSE172143 The proline and serine rich protein PROSER1 mediates O-GlcNAcylation of TET2 to regulate DNA demethylation on UTX-dependent enhancers and CpG islands [WGBS]
Relations
BioProject PRJNA722237

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172145_RAW.tar 45.2 Gb (http)(custom) TAR (of BW, TXT)
SRA Run SelectorHelp

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