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| Status |
Public on Mar 17, 2022 |
| Title |
Transcriptional reprogramming of skeletal muscle stem cells by the niche environment |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
35188098, 36726011 |
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| Submission date |
Apr 13, 2021 |
| Last update date |
Feb 10, 2023 |
| Contact name |
Vahab Soleimani |
| E-mail(s) |
vahab.soleimani@mcgill.ca
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| Organization name |
McGill University
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| Department |
Human Genetics
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| Street address |
3640 rue University
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| City |
Montreal |
| State/province |
QC |
| ZIP/Postal code |
H3A 0C7 |
| Country |
Canada |
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| Platforms (2) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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| Samples (38)
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| GSM5226659 |
Aged satellite cell ATAC-Seq 2 |
| GSM5229302 |
Young myoblast WGBS 1 |
| GSM5229303 |
Young myoblast WGBS 2 |
| GSM5229304 |
Young myoblast WGBS 3 |
| GSM5229305 |
Aged myoblast WGBS 1 |
| GSM5229306 |
Aged myoblast WGBS 2 |
| GSM5229307 |
Aged myoblast WGBS 3 |
| GSM5234338 |
Aged MuSC, FAP, MΦ scRNA-Seq 1 |
| GSM5234339 |
Aged MuSC, FAP, MΦ scRNA-Seq 2 |
| GSM5234340 |
Aged MuSC, FAP, MΦ scRNA-Seq 3 |
| GSM5234341 |
Aged MuSC, FAP, MΦ scRNA-Seq 4 |
| GSM5234342 |
Young MuSC, FAP, MΦ scRNA-Seq 1 |
| GSM5234343 |
Young MuSC, FAP, MΦ scRNA-Seq 2 |
| GSM5234344 |
Young MuSC, FAP, MΦ scRNA-Seq 3 |
| GSM5239571 |
Aged T0-1 |
| GSM5239572 |
Aged T0-2 |
| GSM5239573 |
Aged T21-1 |
| GSM5239574 |
Aged T21-2 |
| GSM5239575 |
Young T0-1 |
| GSM5239576 |
Young T21-1 |
| GSM5239577 |
Young T0-2 |
| GSM5239578 |
Young T0-3 |
| GSM5239579 |
Young T21-3 |
| GSM6339585 |
Aged-58-T0 |
| GSM6339586 |
Aged-58f-T21 |
| GSM6339587 |
Aged-62-2-T21 |
| GSM6339588 |
Aged-62-T0 |
| GSM6339589 |
Aged-900-T0 |
| GSM6339590 |
Aged-900-T21 |
| GSM6339591 |
Yng-55-T0 |
| GSM6339592 |
Yng-55-T21 |
| GSM6339593 |
Yng-59-T0 |
| GSM6339594 |
Yng-59J-T21 |
| GSM6339595 |
Yng-62-T0 |
| GSM6339596 |
Yng-62B-T21 |
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| This SuperSeries is composed of the following SubSeries:
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| GSE171534 |
ATAC-Seq of young and aged satellite cells |
| GSE171604 |
Whole genome bisulfite sequencing of young and old satellite cells |
| GSE171794 |
Single-cell RNA-Sequencing of young and aged satellite cells, macrophages and fibro-adipogenic progenitor cells |
| GSE171997 |
RNA-Sequencing of young and aged satellite cells before and after transplantation into the young niche |
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| Relations |
| BioProject |
PRJNA721672 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE171998_RAW.tar |
4.1 Gb |
(http)(custom) |
TAR (of BIGWIG, MAT, NARROWPEAK, TSV, TXT) |
SRA Run Selector |
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