NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE17160 Query DataSets for GSE17160
Status Public on Jul 05, 2011
Title Regulatory mechanisms of TSG-6 (TNF-alfa-induced protein-6: Tnfip6)-deficient and wild-type synovial fibroblasts
Organism Mus musculus
Experiment type Expression profiling by array
Summary BALB/c mice are susceptible to proteoglycan (PG) aggrecan-induced arthritis (PGIA), and the absence of TSG-6 further increases susceptibility and local inflammatory reactions, including neutrophil invasion into the joints. To gain insight into the mechanisms of TSG-6 action, synovial fibroblasts were isolated from wild-type and TSG-6-KO mice, cultured and exposed to various agents affecting either the TSG-6 expression and/or modify the intracellular function of TSG-6.
In the present microarray studies, we have identified differences in gene expression by fibroblasts isolated from wild-type or TSG-6-KO mice

Keywords: Genetic modification
 
Overall design In this study we compared the gene expression profile of 42 fibroblast cultures from mouse synovial samples. Fifteen samples were wild-type and 27 samples were TSG-6 knockout. In these two genotype groups fibroblasts were treated with TNFa, LPS, TSG-6, HA, or HA+TSG-6, and were compared to untreated samples in the same genotype group. We also compared the same treatments between KO and WT.
 
Contributor(s) Mikecz K, Glant TT, Laszlo A
Citation(s) 21566135
Submission date Jul 16, 2009
Last update date Feb 11, 2019
Contact name Tibor T Glant
E-mail Tibor_Glant@rush.edu
Organization name Rush University Medical Center
Department Orthopedic Surgery
Lab Molecular Medicine
Street address 1735 West Harrison
City Chicago
State/province IL
ZIP/Postal code 60612
Country USA
 
Platforms (1)
GPL1261 [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
Samples (42)
GSM429336 fibroblast, wild-type, untreated, biological replicate 1
GSM429337 fibroblast, wild-type, untreated, biological replicate 2
GSM429338 fibroblast, wild-type, untreated, biological replicate 3
Relations
BioProject PRJNA119657

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE17160_RAW.tar 152.0 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap