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Series GSE171121 Query DataSets for GSE171121
Status Public on Jun 09, 2021
Title MSC-induced lncRNA expression changes in breast cancer cells
Organism Homo sapiens
Experiment type Expression profiling by array
Non-coding RNA profiling by array
Summary The development of triple-negative breast cancers (TNBCs) – a subset of tumors with particularly aggressive pathogenesis – is critically regulated by certain tumor-microenvironment-associated cells called mesenchymal stem/stromal cells (MSCs), which we and others have shown promote TNBC progression by activating a multitude of signaling nodes that propagate malignant traits in neighboring cancer cells. Characterization of these signaling cascades will better our understanding of TNBC biology, and stands to bring about novel therapeutics that can eliminate the morbidity and mortality associated with advanced disease. Here, we particularly focused on an emerging family of non-coding RNAs – called long non-coding RNAs or lncRNAs – and utilized a MSC-supported TNBC progression model to identify specific lncRNAs of functional relevance to TNBC pathogenesis.
We used Affymetrix arrays to identify the gene expression changes that breast cancer cells (in this case, MDA-MB-231 cells) exhibit as they interact with admixed human MSCs
Overall design Green fluorescent protein (GFP) -labeled MDA-MB-231 cells were admixed with human MSCs (at 1:3 ratio of cancer cells to MSCs) and cultured in complete media consisting of DMEM, 10%FBS, and Pen/Strep. After 3 days, cultures were trypsinized, filtered through 70 micometer mesh, suspended, and FACS-sorted to recover GFP-positive cells. GFP-MDA-MB-231 cells cultured alone and treated identically to the co-cultured counterparts were used as controls.
Contributor(s) Tu Z, Karnoub AE
Citation(s) 34059683
Submission date Mar 30, 2021
Last update date Jun 09, 2021
Contact name Antoine Elias Karnoub
Phone 617-735-2082
Organization name Beth Israel Deaconess Medical Center and Harvard Medical School
Department Pathology
Lab Karnoub Lab
Street address 3 Blackfan Circle
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
Platforms (1)
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Samples (8)
GSM5219132 231plus#1
GSM5219133 231plus#2
GSM5219134 231plus#3
BioProject PRJNA718527

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Supplementary file Size Download File type/resource
GSE171121_RAW.tar 40.8 Mb (http)(custom) TAR (of CEL)
GSE171121_TCONS_analysis-3272021_abundance_of_lncRNAs.xlsx 229.0 Kb (ftp)(http) XLSX
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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