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Series GSE169137 Query DataSets for GSE169137
Status Public on Mar 19, 2021
Title Bulk RNA seq of sorted C. elegans neurons
Organism Caenorhabditis elegans
Experiment type Expression profiling by high throughput sequencing
Summary Bulk RNA seq of FACS isolated C. elegans neurons, with pan-neuronal reference, and sorted viable cell reference samples. Collected for comparison to single cell sequencing data
Overall design Cell type specific C. elegans neuronal samples were obtained via FACS for comparison to each other, and to pan-neuronal and all cell references. Sample names describe the cell type targeted (ASG, AVE, AWA, etc…), Rab3 indicates samples targeted with a Pan-Neuronal Marker for direct comparison to each individual cell type. Ref samples were obtained by dissociating and FACS isolation using only stains to sepatate living and dead cells and thus represents an "all cell" reference.
Contributor(s) Barrett A, McWhirter R, Taylor SR, Weinreb A, Miller III DM, Hammarlund M
Citation(s) 33856427
Submission date Mar 18, 2021
Last update date Jun 18, 2021
Contact name Marc Hammarlund
Organization name Yale University
Department Genetics
Lab Hammarlund
Street address 295 Congress Ave
City New Haven
State/province Connecticut
ZIP/Postal code 06510
Country USA
Platforms (1)
GPL18245 Illumina HiSeq 2500 (Caenorhabditis elegans)
Samples (37)
GSM5176766 ASGr13
GSM5176767 ASGr14
GSM5176768 ASGr15
BioProject PRJNA715371
SRA SRP311166

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Supplementary file Size Download File type/resource
GSE169137_Ce_bulk_RNAseq_neuronal_counts_WS274.txt.gz 943.4 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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