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GEO accession:
Series GSE169102
Query DataSets for GSE169102
Status
Public on May 05, 2025
Title
DNA methyltransferase 1 modulates mitochondrial function through bridging m5C RNA methylation
Organisms
Homo sapiens
;
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Web link
https://doi.org/10.1016/j.molcel.2025.04.019
Citation(s)
40328247
Submission date
Mar 17, 2021
Last update date
May 20, 2025
Contact name
Guoping Fan
E-mail(s)
guoping.fan@gmail.com
Organization name
university of california, los angeles
Department
Human Genetics
Street address
695 Charles E Young Drive South
City
los angeles
State/province
ca
ZIP/Postal code
90095
Country
USA
Platforms (7)
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More...
GPL13112
Illumina HiSeq 2000 (Mus musculus)
GPL15520
Illumina MiSeq (Homo sapiens)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL21103
Illumina HiSeq 4000 (Mus musculus)
GPL21493
Illumina HiSeq 3000 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (187)
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GSM5176321
WT cortex 5 prime
GSM5176322
Het cortex 5 prime
GSM5176323
Hom cortex 5 prime
GSM5176324
WT retina 3 prime
GSM5176325
Het retina 3 prime
GSM5176326
Hom retina 3 prime
GSM5176327
WT retina 5 prime
GSM5176328
Hom retina 5 prime
GSM5176377
wt_cortex1_meth
GSM5176378
wt_cortex_w1_meth
GSM5176379
wt_cor_g5_meth
GSM5176380
wt_cor_b6_meth
GSM5176381
hom_cor_w4_meth
GSM5176382
hom_cor_g1_meth
GSM5176383
hom_cortex1_meth
GSM5176384
het_cor_w3_meth
GSM5176385
het_cortexG3_meth
GSM5176386
het_cortexG4_meth
GSM5176387
het_cortexG2_meth
GSM5176388
het_cortex1_meth
GSM5176389
het_cortex_w2_meth
GSM5176390
mouse CB-8565
GSM5176391
mouse CB-8566
GSM5176392
mouse CB-8568
GSM5176393
mouse CB-4719
GSM5176394
mouse CB-4721
GSM5176395
mouse CB-4722
GSM5176396
mouse CB-4723
GSM5176397
Neuron J1-9
GSM5176398
Neuron 29-9
GSM5176399
Neuron J1-12
GSM5176400
Neuron 29-12
GSM5176401
mouse CB-0076
GSM5176402
mouse CB-0077
GSM5176403
mouse CB-0082
GSM5176404
mouse CB-0086
GSM5176405
mouse CB-0087
GSM5176406
mouse CB-0088
GSM5176407
mESC-J1-1
GSM5176408
mESC-HOM-1
GSM5176409
mESC-J1-2
GSM5176410
mESC-HOM-2
GSM5176411
mNPC-J1-9
GSM5176412
mNPC-J1-12
GSM5176413
NPC-J1-7a
GSM5176414
NPC-29-7a
GSM5464312
NPC-J1-4 (17B-01-01)
GSM5464313
NPC-18-4 (17B-01-02)
GSM5464314
NPC-29-4 (17B-01-03)
GSM5464315
NPC-J1-5 (17B-01-04)
GSM5464316
NPC-18-5 (17B-01-05)
GSM5464317
NPC-29-5 (17B-01-06)
GSM5464318
NPC-91-3 (17B-01-07)
GSM5464319
ES-J1 (17B-01-08)
GSM5464320
ES-29 (17B-01-09)
GSM5464321
J1-ES-2 (17F-6-40)
GSM5464322
29-ES-2 (17F-6-41)
GSM5464323
NPC-9-29 (17G-1-10)
GSM5464324
NPC-3-J1 (17G-1-11)
GSM5464325
NPC-3-29 (17G-1-12)
GSM5464326
mouse CB-0076 (17G-1-13)
GSM5464327
mouse CB-0077 (17G-1-14)
GSM5464328
mouse CB-0082 (17G-1-15)
GSM5464329
mouse CB-0086 (17G-1-16)
GSM5464330
mouse CB-0087 (17G-1-17)
GSM5464331
mouse CB-0088 (17G-1-18)
GSM5464332
NPC-12-J1 (17G-1-7)
GSM5464333
NPC-12-29 (17G-1-8)
GSM5464334
NPC-9-J1 (17G-1-9)
GSM5464335
mouse CB-0086 (18A-1-1)
GSM5464336
mouse CB-0088 (18A-1-2)
GSM5464337
Diff-9-J1 (18A-1-3)
GSM5464338
Diff-12-J1 (18A-1-4)
GSM5464339
Diff-12-29 (18A-1-5)
GSM5464340
mouse CB-0076 (18A-2-1)
GSM5464341
Diff-9-29 (18A-2-10)
GSM5464342
Diff-3-J1 (18A-2-11)
GSM5464343
Diff-3-29 (18A-2-12)
GSM5464344
mouse CB--4719 (18A-2-2)
GSM5464345
mouse CB--4720 (18A-2-3)
GSM5464346
mouse CB--4721 (18A-2-4)
GSM5464347
mouse CB--4722 (18A-2-5)
GSM5464348
mouse CB--4723 (18A-2-6)
GSM5464349
mouse CB--8565 (18A-2-7)
GSM5464350
mouse CB--8566 (18A-2-8)
GSM5464351
mouse CB--8568 (18A-2-9)
GSM5464352
WT HT (18c-1-52)
GSM5464353
19 HT (18c-1-53)
GSM5464354
85 HT (18c-1-54)
GSM5464355
wt 84 HT (18c-1-55)
GSM5464356
19 CB (18c-1-56)
GSM5464357
WT CB (18c-1-57)
GSM5464358
85 CB (18c-1-58)
GSM5464359
wt 84 CB (18c-1-59)
GSM5464360
het cb1 (19a-1-1)
GSM5464361
het cor1 (19a-1-2)
GSM5464362
wt cb1 (19a-1-3)
GSM5464363
wt cor1 (19a-1-4)
GSM5464364
hom cb1 (19a-1-5)
GSM5464365
hom cor1 (19a-1-6)
GSM5464366
het cor3 (19a-2-10)
GSM5464367
wt cb3 (19a-2-11)
GSM5464368
wt cor3 (19a-2-12)
GSM5464369
wt cb2 (19a-2-5)
GSM5464370
wt cor2 (19a-2-6)
GSM5464371
het cb2 (19a-2-7)
GSM5464372
het cor2 (19a-2-8)
GSM5464373
het cb3 (19a-2-9)
GSM5464374
hom cor2 (19a-3-10)
GSM5464375
het cb4 (19a-3-11)
GSM5464376
het cor4 (19a-3-12)
GSM5464377
hom cb2 (19a-3-9)
GSM5464378
het cb5 (19a-4-1)
GSM5464379
het cor4 (19a-4-2)
GSM5464380
het Hip (19a-4-3)
GSM5464381
het thalum (19a-4-4)
GSM5464382
wt cb4 (19a-4-5)
GSM5464383
wt cor4 (19a-4-6)
GSM5464384
hom cor3 (19a-5-3)
GSM5464385
Hom cb3 (19a-5-6)
GSM5464386
hom cor4 (19a-5-7)
GSM5464387
Het cor5 (19a-5-9)
GSM5464388
retina het6 (Het retina n4)
GSM5464389
retina het1 (Het retina R1)
GSM5464390
retina het2 (Het retina R2)
GSM5464391
retina het3 (Het retina R3)
GSM5464392
retina het4 (Het retina R4)
GSM5464393
retina het5 (Het retina R5)
GSM5464394
retina wt1 (Retina wt1 h7)
GSM5464395
retina wt2 (Retina wt2 h7b)
GSM5464396
retina wt3 (Retina wt3 h8)
GSM5464397
retina wt4 (Retina wt4 n2)
GSM5706909
wt α-Amanitin treatment 0h
GSM5706910
het α-Amanitin treatment 0h
GSM5706911
hom α-Amanitin treatment 0h
GSM5706912
wt α-Amanitin treatment 4h
GSM5706913
het α-Amanitin treatment 4h
GSM5706914
hom α-Amanitin treatment 4h
GSM6733480
HeLa_ctrl1, bsseq
GSM6733481
HeLa_ctrl2, bsseq
GSM6733482
HeLa_siRNA1, bsseq
GSM6733483
HeLa_siRNA2, bsseq
GSM6733508
Cortex_wt1_bsseq
GSM6733509
Cortex_wt2_bsseq
GSM6733510
Cortex_het1_bsseq
GSM6733511
Cortex_het2_bsseq
GSM6733512
Cortex_het3_bsseq
GSM6733513
Cortex_het4_bsseq
GSM6733514
Cortex_het5_bsseq
GSM6733515
Cortex_hom1_bsseq
GSM6733516
Cortex_hom2_bsseq
GSM8815034
RNA-BS-seq NSUN2 knockdown rep1
GSM8815035
RNA-BS-seq NSUN2 knockdown rep2
GSM8815036
RNA-BS-seq mock treatment rep1
GSM8815037
RNA-BS-seq mock treatment rep2
GSM8815038
eCLIP-seq NSUN2 IP rep1
GSM8815039
eCLIP-seq NSUN2 IP rep2
GSM8815040
eCLIP-seq NSUN2 Input rep1
GSM8815041
eCLIP-seq NSUN2 Input rep2
GSM8815042
eCLIP-seq DNMT1 IP HeLa rep1
GSM8815043
eCLIP-seq DNMT1 IP HeLa rep2
GSM8815044
eCLIP-seq DNMT1 Input HeLa rep1
GSM8815045
eCLIP-seq DNMT1 Input HeLa rep2
GSM8815046
eCLIP-seq DNMT1 IP 293T rep1
GSM8815047
eCLIP-seq DNMT1 IP 293T rep2
GSM8815048
eCLIP-seq DNMT1 Input 293T
GSM8815049
SLAM-seq_HeLa_WT_0h
GSM8815050
SLAM-seq_HeLa_WT_6h
GSM8815051
SLAM-seq_HeLa_WT_24h
GSM8815052
SLAM-seq_HeLa_DNMT1 knockdown_0h
GSM8815053
SLAM-seq_HeLa_DNMT1 knockdown_6h
GSM8815054
SLAM-seq_HeLa_DNMT1 knockdown_24h
GSM8815055
SLAM-seq_Human_NPC_WT_0h
GSM8815056
SLAM-seq_Human_NPC_WT_6h
GSM8815057
SLAM-seq_Human_NPC_WT_24h
GSM8815058
SLAM-seq_Human_NPC_with_heterozygous_A570V_0h
GSM8815059
SLAM-seq_Human_NPC_with_heterozygous_A570V_6h
GSM8815060
SLAM-seq_Human_NPC_with_heterozygous_A570V_24h
GSM8815061
SLAM-seq_Human_NPC_with_homozygous_A570V_0h
GSM8815062
SLAM-seq_Human_NPC_with_homozygous_A570V_6h
GSM8815063
SLAM-seq_Human_NPC_with_homozygous_A570V_24h
GSM8815429
Riboseq mock treatment
GSM8815430
RNAseq mock treatment
GSM8815431
Riboseq DNMT1 knockdown
GSM8815432
RNAseq DNMT1 knockdown
GSM8880829
RNA-BS-seq α-Amanitin treatment
GSM8880830
RNA-BS-seq α-Amanitin treatment and DNMT1 knockdown
This SuperSeries is composed of the following SubSeries:
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More...
GSE169097
A Dominant mutation in Dnmt1 leads epigenetic changes (scRNAseq and snRNAseq)
GSE169100
A Dominant mutation in Dnmt1 leads epigenetic changes (Emseq)
GSE169101
A Dominant mutation in Dnmt1 leads epigenetic changes (rrbs)
GSE180529
A Dominant mutation in Dnmt1 leads epigenetic changes (Bulk RNAseq)
GSE218053
Exploring the Role of DNMT1 in RNA m⁵C Methylation (RNA-BS-SEQ DNMT1 knockdown)
GSE218055
A Dominant mutation in Dnmt1 leads epigenetic changes (RNA-BS-seq Mouse Cortex)
GSE290472
Exploring the Role of DNMT1 in RNA m⁵C Methylation (RNA-BS-SEQ NSUN2 Knock down)
GSE290473
Exploring the Role of DNMT1 in RNA m⁵C Methylation (eCLIPseq II)
GSE290474
Exploring the Role of DNMT1 in RNA m⁵C Methylation (SLAM-seq)
GSE290508
Exploring the Role of DNMT1 in RNA m⁵C Methylation (Ribo-seq)
Relations
BioProject
PRJNA715210
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Download
File type/resource
GSE169102_RAW.tar
4.2 Gb
(http)
(custom)
TAR (of BW, COV, MTX, TSV, TXT)
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