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Series GSE16865 Query DataSets for GSE16865
Status Public on Jul 04, 2009
Title Heterologous microarrays for the study of drought stress in Musa
Platform organisms Arabidopsis thaliana; Oryza sativa
Sample organism Musa sp.
Experiment type Expression profiling by array
Other
Summary 'Systems-wide' approaches such as microarray RNA-profiling are ideally suited to the study of the complex, overlapping responses of plants to biotic and abiotic stresses. However, commercial microarrays are only available for a limited number of plant species and development costs are so substantial as to be prohibitive for most research groups. Here, we evaluate the use of cross-hybridisation to Affymetrix oligonucleotide GeneChip microarrays to profile the response of the banana (Musa sp.) leaf transcriptome to drought stress using a genomic DNA (gDNA)-based probe-selection strategy to improve the efficiency of detection of differentially expressed Musa transcripts.
 
Overall design GeneChip analyses were performed to profile the response of the banana (Musa sp.) leaf transcriptome to drought stress using a genomic DNA (gDNA)-based probe-selection strategy to improve the efficiency of detection of differentially expressed Musa transcripts.
 
Contributor(s) Davey MW, Graham NS, Vanholme B, Swennen R, May ST, Keulemans J
Citation(s) 19758430
Submission date Jun 26, 2009
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) affy@arabidopsis.info
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platforms (2)
GPL198 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array
GPL2025 [Rice] Affymetrix Rice Genome Array
Samples (4)
GSM422672 Drought
GSM422673 Musa_DNA_ATH1
GSM422674 Musa_DNA_RICE
Relations
BioProject PRJNA117567

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE16865_RAW.tar 25.9 Mb (http)(custom) TAR (of CEL, CHP)
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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