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GEO accession:
Series GSE167168
Query DataSets for GSE167168
Status
Public on Aug 01, 2021
Title
H3K9me blocks transcription factor activity in differentiated cells to ensure tissue integrity
Organism
Caenorhabditis elegans
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Other
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34737442
Submission date
Feb 21, 2021
Last update date
Nov 30, 2021
Contact name
Jan Padeken
E-mail(s)
j.padeken@imb-mainz.de
Organization name
Institute of Molecular Biology
Street address
Ackermannweg 4
City
Mainz
ZIP/Postal code
55128
Country
Germany
Platforms (1)
GPL18245
Illumina HiSeq 2500 (Caenorhabditis elegans)
Samples (40)
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GSM5098310
ATAC_N2_muscle_rep1 [wt_a]
GSM5098311
ATAC_N2_muscle_rep2 [wt_b]
GSM5098312
ATAC_N2_muscle_rep3 [wt_c]
GSM5098313
ATAC_met2_muscle_rep1 [met2_a]
GSM5098314
ATAC_met2_muscle_rep2 [met2_b]
GSM5098315
ATAC_met2_muscle_rep3 [met2_c]
GSM5098316
ATAC_set25_muscle_rep1 [set25_a]
GSM5098317
ATAC_set25_muscle_rep2 [set25_b]
GSM5098318
ATAC_set25_muscle_rep3 [set25_c]
GSM5098319
ATAC_met2set25_muscle_rep1 [met2set25_a]
GSM5098320
ATAC_met2set25_muscle_rep2 [met2set25_b]
GSM5098321
ATAC_met2set25_muscle_rep3 [met2set25_c]
GSM5098322
H3K9me2_N2_muscle [wt_H3K9me2_a]
GSM5098323
H3K9me3_N2_muscle [wt_H3K9me3_a]
GSM5098324
H3K27ac_N2_muscle [wt_H3K27ac_a]
GSM5098325
H3K27ac_met2_muscle [met2_H3K27ac_a]
GSM5098326
MNasecontrol_N2_muscle [wt_MNAseControl_a]
GSM5098327
MNasecontrol_met2_muscle [met2_MNAseControl_a]
GSM5098328
RNA_N2_muscle_rep1 [muscle_wt_1]
GSM5098329
RNA_N2_muscle_rep2 [muscle_wt_2]
GSM5098330
RNA_N2_non-muscle_rep1 [negative_wt_1]
GSM5098331
RNA_N2_non-muscle_rep2 [negative_wt_2]
GSM5098332
RNA_met2_muscle_rep1 [muscle_GWmet2_1]
GSM5098333
RNA_met2_muscle_rep2 [muscle_met2_2]
GSM5098334
RNA_set25_muscle_rep1 [muscle_set25_1]
GSM5098335
RNA_set25_muscle_rep2 [muscle_set25_2]
GSM5098336
RNA_met2set25_muscle_rep1 [muscle_met2set25_1]
GSM5098337
RNA_met2set25_muscle_rep2 [muscle_met2set25_2]
GSM5098338
RNA_N2_seamcell_rep1 [wt_a]
GSM5098339
RNA_N2_seamcell_rep2 [wt_b]
GSM5098340
RNA_met2_seamcell_rep1 [met2_a]
GSM5098341
RNA_met2_seamcell_rep2 [met2_b]
GSM5098342
RNA_set25_seamcell_rep1 [set25_a]
GSM5098343
RNA_set25_seamcell_rep2 [set25_b]
GSM5098344
RNA_met2set25_seamcell_rep1 [met2set25_a]
GSM5098345
RNA_met2set25_seamcell_rep2 [met2set25_b]
GSM5098346
RNA_degron-nonauxin_muscle_rep1 [no_auxin_1]
GSM5098347
RNA_degron-nonauxin_muscle_rep2 [no_auxin_2]
GSM5098348
RNA_degron-auxin_muscle_rep1 [auxin_1]
GSM5098349
RNA_degron-auxin_muscle_rep2 [auxin_2]
This SuperSeries is composed of the following SubSeries:
GSE167165
H3K9me blocks transcription factor activity in differentiated cells to ensure tissue integrity [ATAC-seq]
GSE167166
H3K9me blocks transcription factor activity in differentiated cells to ensure tissue integrity [CUT&RUN; ChICseq]
GSE167167
H3K9me blocks transcription factor activity in differentiated cells to ensure tissue integrity [RNA-seq]
Relations
BioProject
PRJNA703537
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