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Series GSE166938 Query DataSets for GSE166938
Status Public on Feb 18, 2021
Title Next Generation Sequencing of bacterial surface-displayed ENAH EVH1 ligand peptides after a FACS titration sort (MassTitr)
Organism Escherichia coli
Experiment type Other
Summary We used bacterial surface display and FACS to sort peptide binders to a tetramerized ENAH EVH1 domain at multiple concentrations of ENAH into 4 gates. This experiment was repeated three times. By calculating the distribution of each clone across gates at multiple concentrations, we are able to assess whether a clone exhibited concentration-dependent binding to ENAH EVH1 domain, allowing us to distinguish binders from nonbinders.
 
Overall design A multiplexed, barcoded dataset with three replicate sorts of four bins at eight receptor concentrations
 
Contributor(s) Keating AE, Hwang T
Citation(s) 35076015
Submission date Feb 17, 2021
Last update date Feb 02, 2022
Contact name Theresa Hwang
E-mail(s) hwangth@mit.edu
Organization name MIT
Street address 77 Massachusetts Ave
City Cambridge
ZIP/Postal code 02139
Country USA
 
Platforms (1)
GPL21222 Illumina NextSeq 500 (Escherichia coli)
Samples (97)
GSM5088705 MassTitr_rep1_30uM_EVH1_gateA
GSM5088706 MassTitr_rep1_30uM_EVH1_gateB
GSM5088707 MassTitr_rep1_30uM_EVH1_gateC
Relations
BioProject PRJNA702444
SRA SRP306842

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE166938_MassTitr_column_headers.txt.gz 242 b (ftp)(http) TXT
GSE166938_MassTitr_rep1.csv.gz 33.5 Mb (ftp)(http) CSV
GSE166938_MassTitr_rep2.csv.gz 56.1 Mb (ftp)(http) CSV
GSE166938_MassTitr_rep3.csv.gz 29.0 Mb (ftp)(http) CSV
GSE166938_Supp_barcodekey.xlsx 258.4 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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