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Series GSE166166 Query DataSets for GSE166166
Status Public on Mar 20, 2021
Title Resident memory T cells form during persistent antigen exposure leading to allograft rejection 
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Tissue resident memory T cells (TRM) contained at sites of previous infection provide local protection against re-infection. Whether they form and function in organ transplants where cognate antigen persists is unclear. This is a key question in transplantation as T cells are detected long-term in allografts, but it is not known whether they are exhausted or are functional memory T cells. Using a mouse model of kidney transplantation, we showed  that antigen-specific and polyclonal effector T cells differentiated in the graft into TRM and subqeuntly caused allograft rejection. TRM identity was established by surface phenotype, transcriptional profile, and inability to recirculate in parabiosis and re-transplantation experiments. Graft TRM proliferated locally, produced IFNγ upon re-stimulation, and their in vivo depletion attenuated rejection. Importantly, the vast majority of antigen-specific and polyclonal TRM lacked phenotypic and transcriptional exhaustion markers. Single cell analysis of graft T cells early and late after transplantation identified a transcriptional program associated with transition to the tissue resident state that could serve as a platform for the discovery of therapeutic targets. Thus, recipient effector T cells differentiate into functional graft TRM that maintain rejection locally. Targeting these TRM could improve renal transplant outcomes.
 
Overall design Single Cell RNA sequencing of graft infiltrating OT-I and polyclonal T cells early and late after transplantation of OVA expressing allogeneic kidneys in mice
 
Contributor(s) Abou-Daya KI, Oberbarnscheidt MH, Lakkis FG
Citation(s) 33741656
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 AI049466 T Cell Memory in Organ Transplantation UNIVERSITY OF PITTSBURGH AT PITTSBURGH Fadi G. Lakkis
Submission date Feb 04, 2021
Last update date Apr 13, 2021
Contact name Khodor I Abou-Daya
E-mail(s) kha17@pitt.edu
Organization name Starzl Transplantation Institute
Department Surgery
Street address 200 Lothrop Street
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (4)
GSM5065087 OT-I
GSM5065088 OT-I [HASH]
GSM5065089 Polyclonal
Relations
BioProject PRJNA699537
SRA SRP304729

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Supplementary file Size Download File type/resource
GSE166166_RAW.tar 35.7 Mb (http)(custom) TAR (of CSV, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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