|
| Status |
Public on Sep 22, 2021 |
| Title |
Single-cell ATAC-seq of developing cortical interneurons. |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Single-cell ATAC-sequencing of cortical GABAergic interneurons to characterize the chromatin landscapes of these cells at several timepoints across development - from their origins in the ganglionic eminences, upon migration to the cortex, settling in cortical laminae, and through maturation.
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| |
|
| Overall design |
scATAC-seq libraries generated from E13 MGE, E14 CGE, E14 Cortex, E18 Dlx6a+ Cortex, P2 Dlx6a+ Cortex, P10 Dlx6a+ Cortex, P28 Dlx6a+ Cortex
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| |
|
| Contributor(s) |
Allaway KC, Gabitto MI |
| Citation(s) |
34552240 |
|
https://www.nature.com/articles/s41586-021-03933-1
|
| |
| Submission date |
Jan 18, 2021 |
| Last update date |
Oct 01, 2021 |
| Contact name |
Kathryn Allaway |
| Organization name |
Broad Institute
|
| Department |
Stanley Center for Psychiatric Disease
|
| Lab |
Fishell Lab
|
| Street address |
75 Ames St
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02142 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
|
| Samples (13)
|
|
| This SubSeries is part of SuperSeries: |
| GSE165233 |
Genetic and epigenetic coordination of cortical interneuron development |
|
| Relations |
| BioProject |
PRJNA693000 |
| SRA |
SRP302232 |
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