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Series GSE164849 Query DataSets for GSE164849
Status Public on Jan 15, 2021
Title Spatially mapped single-cell chromatin accessibility
Organisms Homo sapiens; Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary sciMAP-ATAC as a technology to produce single-cell ATAC-seq data with cells mapped to spatially-defined regions.
Overall design Single-cell ATAC-seq data including sci-ATAC-seq and sciMAP-ATAC-seq.
Contributor(s) Adey AC, Thornton CA
Citation(s) 33627658
Submission date Jan 14, 2021
Last update date Mar 16, 2021
Contact name Andrew Adey
Organization name Oregon Health & Science University
Department MMG
Lab Adey Lab
Street address 3181 S.W. Sam Jackson Park Rd, RHH, L103
City Portland
State/province OR
ZIP/Postal code 97239-3098
Country USA
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (5)
GSM5021069 sciATAC Mouse Brain
GSM5021070 sciMAP Mouse Brain
GSM5021071 sciMAP Mouse SSp
BioProject PRJNA692203
SRA SRP301780

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE164849_RAW.tar 164.1 Mb (http)(custom) TAR (of TXT)
GSE164849_sciMAP.metadata.csv.gz 1.5 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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