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Series GSE164774 Query DataSets for GSE164774
Status Public on Jan 14, 2021
Title Satellite cell expansion is mediated by P-eIF2α-dependent Tacc3 translation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Translational control of gene expression is an important regulator of adult stem cell quiescence, activation and self-renewal. In skeletal muscle, quiescent satellite cells maintain low levels of protein synthesis, mediated in part through the phosphorylation of eIF2α (P-eIF2α). Pharmacological inhibition of the eIF2α phosphatase with the small molecule sal003 maintains P-eIF2α and permits the expansion of satellite cells ex vivo. Paradoxically, P-eIF2α also increases the translation of specific mRNAs, which is mediated by P-eIF2α-dependent read-through of inhibitory upstream open reading frames (uORFs). Here, we ask whether P-eIF2α-dependent mRNA translation enables expansion of satellite cells. Using transcriptomic and proteomic analyses, we show a number of genes associated with the assembly of the spindle pole to be upregulated at the level of protein, without corresponding change in mRNA levels, in satellite cells expanded in the presence of sal003. We show that uORFs in the 5′ UTR of mRNA for the mitotic spindle stability gene Tacc3 direct P-eIF2α-dependent translation. Satellite cells deficient for TACC3 exhibit defects in expansion, self-renewal and regeneration of skeletal muscle.
 
Overall design Satellite cells of adult Pax3GFP/+ mice after 4-day culture in presence of 10 μM sal003 (4 replicates) or under normal conditions (DMSO, 4 replicates) for a total of 8 samples.
 
Contributor(s) Fujita R, Jamet S, Lean G, Cheng HM, Hébert S, Kleinman CL, Crist C
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Submission date Jan 13, 2021
Last update date Jan 15, 2021
Contact name Claudia L Kleinman
E-mail(s) claudia.kleinman@mcgill.ca
Phone 514-340-8222 26129
Organization name Lady Davis Institute for Medical Research
Department Human Genetics
Street address 3999 Côte Ste-Catherine Road
City Montréal
State/province Québec
ZIP/Postal code H3T 1E2
Country Canada
 
Platforms (1)
GPL16417 Illumina MiSeq (Mus musculus)
Samples (8)
GSM5018543 DMSO_1
GSM5018544 DMSO_2
GSM5018545 DMSO_3
Relations
BioProject PRJNA691923
SRA SRP301616

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE164774_Ensembl.ensGene.exon.raw_counts.tsv.gz 591.4 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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