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Series GSE164159 Query DataSets for GSE164159
Status Public on Jan 04, 2021
Title Evolution of conserved noncoding sequences (CNS) in Arabidopsis thaliana
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report ATAC-seq for several A. thaliana accessions in healthy leaf tissue. As part of an investigation into the evolution of conserved noncoding sequences, our goal was to identify overlaps between regions of accessible chromatin and CNS. Manuscript in review. Biorxiv preprint doi: https://doi.org/10.1101/727669
 
Overall design ATAC-seq in diverse A. thaliana accessions
 
Contributor(s) Lu Z, Schmitz RJ
Citation(s) 33565589
Submission date Jan 03, 2021
Last update date Apr 05, 2021
Contact name Alan Yocca
E-mail(s) aeyap42@gmail.com
Phone 4129652271
Organization name Michigan State University
Street address 1066 Bogue St. Room A317
City East Lansing
State/province MI
ZIP/Postal code 48824
Country USA
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (96)
GSM4998478 Arabidopsis thaliana Ad-0 rep 1
GSM4998479 Arabidopsis thaliana Ad-0 rep 2
GSM4998480 Arabidopsis thaliana Ad-0 rep 3
Relations
BioProject PRJNA689309
SRA SRP300093

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE164159_RAW.tar 28.0 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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