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Series GSE163310 Query DataSets for GSE163310
Status Public on May 16, 2022
Title METTL3 preferentially enhances non-m6A translation of epigenetic factors and promotes tumorigenesis (meRIP, RIP and polysome-seq)
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Other
Summary Methyltransferase-like 3 (METTL3) is the best known m6A methyltransferase of the N6-adenosine-methyltransferase complex that functions in the reversible epi-transcriptome modulation of m6A modification. Besides acting as a m6A methyltransferase, METTL3 also regulates mRNA translation as well as other biological processes either through m6A “reader”-mediated downstream effect or directly binding to m6A sites, but the underlying mechanism and biological significance of these cytoplasmic events remain undefined. Here, we demonstrated that METTL3 inhibition significantly delayed gastric tumorigenesis in patient-derived xenograft model. Intriguingly, global METTL3-binding profiling revealed METTL3 occupied numerous oncogenic mRNAs without m6A signals, indicating a novel mechanism independent of m6A machinery. Furthermore, METTL3 was observed to translocate from nucleus to cytoplasm during gastric carcinogenesis, and its cytoplasm-to-nucleus ratio was correlated with cancer progression. In addition, the nuclear retention of METTL3 nearly abolished its tumor-promoting activity. Mechanistically, METTL3 interacted with PABPC1 to promote RNA looping, thus facilitating the translation of multiple oncogenic mRNAs. Taken together, our findings indicate an unexpected role of METTL3 as an important translational regulator independent of either m6A-“writer” or -“reader” activities and suggest METTL3 as a therapeutic target in gastric cancer.
 
Overall design Examination the cytoplasmic function of METTL3 in human gastric cancer
 
Contributor(s) Wei X, Pi J, Huo Y, Gao Y, Wei Q, Wang F, Jia Y
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Submission date Dec 16, 2020
Last update date May 18, 2022
Contact name Yufeng Gao
E-mail(s) gaoyufeng@ibms.pumc.edu.cn
Organization name Chinese Academy of Medical Sciences & Peking Union Medical College
Department State Key Laboratory of Medical Molecular Biology
Street address Dong Dan San Tiao 5
City Beijing
State/province Beijing
ZIP/Postal code 100005
Country China
 
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (36)
GSM4976943 RIP_input_rep1
GSM4976944 RIP_input_rep2
GSM4976945 RIP_IgG_rep1
Relations
BioProject PRJNA685739
SRA SRP298113

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE163310_IP_MeRIP_MeTPeak_peaks.bed.gz 1.2 Mb (ftp)(http) BED
GSE163310_IP_MeRIP_exomePeak_peaks.bed.gz 791.6 Kb (ftp)(http) BED
GSE163310_IgG_RIP.txt.gz 1.7 Mb (ftp)(http) TXT
GSE163310_METTL3_RIP.txt.gz 1.6 Mb (ftp)(http) TXT
GSE163310_PABPC1_RIP.txt.gz 1.7 Mb (ftp)(http) TXT
GSE163310_RAW.tar 5.3 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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