|
| Status |
Public on Jun 02, 2009 |
| Title |
Dm_y[1]cn[1] bw[1] sp[1]_embryo_10-12h_poly-Ap_p200_418-419-420_38bp |
| Project |
modENCODE
|
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by genome tiling array
Non-coding RNA profiling by genome tiling array
|
| Summary |
modENCODE_submission_106
This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
Keywords: Transcript tiling array analysis
|
| |
|
| Overall design |
EXPERIMENT TYPE: Transcript tiling array analysis
BIOLOGICAL SOURCE: Strain: Y cn bw sp; Developmental Stage: Embryo 10-12h
GENOTYPE: y[1] oc[R3.2]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] lab[R4.2] MstProx[1] GstD5[1] Rh6[1]
SEX: Unknown
NUMBER OF REPLICATES: 3; Replicate 1 applied to 1 array(s), Replicate 2 applied to 1 array(s), Replicate 3 applied to 1 array(s), No dye swap.
EXPERIMENTAL FACTORS: Developmental Stage Embryo 10-12h
|
| Web link |
http://www.modencode.org
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
|
| |
|
| Contributor(s) |
Gingeras T, Willingham A, Celniker S |
| Citation(s) |
21179090 |
| BioProject |
PRJNA168994 |
| Submission date |
May 28, 2009 |
| Last update date |
Jul 08, 2015 |
| Contact name |
DCC modENCODE |
| E-mail(s) |
help@modencode.org
|
| Phone |
416-673-8579
|
| Organization name |
Ontario Institute for Cancer Research
|
| Lab |
modENCODE DCC
|
| Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
|
| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A3 |
| Country |
Canada |
| |
|
| Platforms (1) |
| GPL6629 |
[DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array |
|
| Samples (3) |
| GSM409577 |
embryos,10-12 hr after egg laying (Celniker/RNA:418) extraction1_array1 |
| GSM409578 |
embryos,10-12 hr after egg laying (Celniker/RNA:420) extraction2_array1 |
| GSM409579 |
embryos,10-12 hr after egg laying (Celniker/RNA:419) extraction3_array1 |
|
