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Series GSE16265 Query DataSets for GSE16265
Status Public on Jun 09, 2009
Title SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
Platform organism Oryza sativa
Sample organisms Oryza sativa Indica Group; Oryza sativa Japonica Group
Experiment type Expression profiling by array
Summary Nucleotide polymorphisms can potentially influence the hybridization of mRNA to 25-mer oligonucleotides. Because Affymetrix Rice Genome Array was designated mainly for Nipponbare genome of Oryza sativa, the expression level of other varieties could not be estimated correctly. We tried to apply new approaches to estimate expression level by discerning the probe-level differential hybridization.
Overall design Nipponbare and 93-11 replicates were analyzed.
Contributor(s) Horiuchi Y, Harushima Y, Kurata N
Citation(s) 19419536
Submission date May 28, 2009
Last update date Dec 27, 2017
Contact name Nori Kurata
Phone +81-55-981-6808
Fax +81-55-981-6879
Organization name National Institute of Genetics
Lab Plant Genetics Lab.
Street address 1111 Yata
City Mishima
ZIP/Postal code 411-8540
Country Japan
Platforms (1)
GPL2025 [Rice] Affymetrix Rice Genome Array
Samples (10)
GSM409421 Nipponbare_young panicle 2cm, biological rep1
GSM409422 Nipponbare_young panicle 2cm, biological rep2
GSM409427 Nipponbare_young panicle 2cm, biological rep3
BioProject PRJNA115105

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE16265_RAW.tar 53.0 Mb (http)(custom) TAR (of CEL, CHP)
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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