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| Status |
Public on Jan 01, 2023 |
| Title |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Other
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
38326311 |
| |
| Submission date |
Dec 03, 2020 |
| Last update date |
Feb 15, 2024 |
| Contact name |
Jinxiu Li |
| Organization name |
China Agricutural University
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| Department |
College of biological sciences
|
| Lab |
State key laboratories of Agrobiotechnology
|
| Street address |
Yuanmingyuan west road 2#
|
| City |
Beijing |
| State/province |
Beijing |
| ZIP/Postal code |
100193 |
| Country |
China |
| |
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| Platforms (5)
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| GPL15520 |
Illumina MiSeq (Homo sapiens) |
| GPL16417 |
Illumina MiSeq (Mus musculus) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
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| Samples (185)
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| GSM4932593 |
VCP67_1 (HiChIP) |
| GSM4952631 |
mASPS_1_ASPSCR1 |
| GSM4952632 |
mASPS_1_input |
| GSM4952633 |
mASPS_2_ASPSCR1 |
| GSM4952634 |
mASPS_2_input |
| GSM4952635 |
mASPS_3_ASPSCR1 |
| GSM4952636 |
mASPS_3_RNAPol2 |
| GSM4952637 |
mASPS_3_input |
| GSM4952638 |
1N15_H3K27ac |
| GSM4952639 |
1N15_H3K27me3 |
| GSM4952640 |
1N15_H3K36me3 |
| GSM4952641 |
1N15_H3K4me1 |
| GSM4952642 |
1N15_input |
| GSM4952643 |
2N15_H3K27ac |
| GSM4952644 |
2N15_H3K27me3 |
| GSM4952645 |
2N15_H3K36me3 |
| GSM4952646 |
2N15_H3K4me1 |
| GSM4952647 |
2N15_input |
| GSM4952648 |
N26_H3K27ac |
| GSM4952649 |
N26_H3K27me3 |
| GSM4952650 |
N26_H3K36me3 |
| GSM4952651 |
N26_H3K4me1 |
| GSM4952652 |
N26_input |
| GSM4952653 |
N28_H3K27ac |
| GSM4952654 |
N28_H3K27me3 |
| GSM4952655 |
N28_H3K36me3 |
| GSM4952656 |
N28_H3K4me1 |
| GSM4952657 |
N28_input |
| GSM4952658 |
N30_H3K27ac |
| GSM4952659 |
N30_H3K27me3 |
| GSM4952660 |
N30_H3K36me3 |
| GSM4952661 |
N30_H3K4me1 |
| GSM4952662 |
N30_input |
| GSM4952663 |
SFO_ASPL |
| GSM4952664 |
SFO_input |
| GSM4952665 |
SLC_ASPL |
| GSM4952666 |
SLC_Pol2 |
| GSM4952667 |
SLC_VCP |
| GSM4952668 |
SLC_input |
| GSM4952669 |
10894_H3K27ac |
| GSM4952670 |
10894_H3K27me3 |
| GSM4952671 |
10894_H3K36me3 |
| GSM4952672 |
10894_H3K4me1 |
| GSM4952673 |
10894_input |
| GSM4952674 |
ASPS_Human_soft_thigh_H3K27ac |
| GSM4952675 |
ASPS_Human_soft_thigh_H3K27me3 |
| GSM4952676 |
ASPS_Human_soft_thigh_H3K36me3 |
| GSM4952677 |
ASPS_Human_soft_thigh_H3K4me1 |
| GSM4952678 |
ASPS_Human_soft_thigh_input |
| GSM4952679 |
SCR_1 |
| GSM4952680 |
SCR_2 |
| GSM4952681 |
SCR_3 |
| GSM4952682 |
SCR_4 |
| GSM4952683 |
SCR_input_1 |
| GSM4952684 |
SCR_input_2 |
| GSM4952685 |
SCR_input_3 |
| GSM4952686 |
SCR_input_4 |
| GSM4952687 |
TFE30_1 |
| GSM4952688 |
TFE30_2 |
| GSM4952689 |
TFE30_3 |
| GSM4952690 |
TFE30_input_1 |
| GSM4952691 |
TFE30_input_2 |
| GSM4952692 |
TFE30_input_3 |
| GSM4952693 |
TFE31_1 |
| GSM4952694 |
TFE31_2 |
| GSM4952695 |
TFE31_3 |
| GSM4952696 |
TFE31_input_1 |
| GSM4952697 |
TFE31_input_2 |
| GSM4952698 |
TFE31_input_3 |
| GSM4952699 |
VCP65_1 |
| GSM4952700 |
VCP65_2 |
| GSM4952701 |
VCP65_3 |
| GSM4952702 |
VCP65_input_1 |
| GSM4952703 |
VCP65_input_2 |
| GSM4952704 |
VCP65_input_3 |
| GSM4952705 |
VCP67_1 |
| GSM4952706 |
VCP67_2 |
| GSM4952707 |
VCP67_3 |
| GSM4952708 |
VCP67_input_1 |
| GSM4952709 |
VCP67_input_2 |
| GSM4952710 |
VCP67_input_3 |
| GSM4952711 |
FUUR1-ASPSCR1 |
| GSM4952712 |
FUUR1-RNAPol2 |
| GSM4952713 |
FUUR1-input |
| GSM4952714 |
FUUR1_2-ASPSCR1 |
| GSM4952715 |
FUUR1_2-RNAPol2 |
| GSM4952716 |
FUUR1_2-input |
| GSM4952717 |
FUUR-ChIP-VCP146a |
| GSM4952718 |
FUUR-ChIP-VCP146b |
| GSM4952719 |
FUUR-ChIP-VCP740a |
| GSM4952720 |
FUUR-ChIP-VCP740b |
| GSM4952721 |
FUUR-ChIP-input-a |
| GSM4952722 |
FUUR-ChIP-input-b |
| GSM4952723 |
ASPS1_ASPL_1 |
| GSM4952724 |
ASPS1_ASPL_2 |
| GSM4952725 |
ASPS1_ASPL_3 |
| GSM4952726 |
ASPS1_Pol2_1 |
| GSM4952727 |
ASPS1_Pol2_2 |
| GSM4952728 |
ASPS1_Pol2_3 |
| GSM4952729 |
ASPS1_input_1 |
| GSM4952730 |
ASPS1_input_2 |
| GSM4952731 |
ASPS1_input_3 |
| GSM4952781 |
FU-UR-1, SCR-1 |
| GSM4952782 |
FU-UR-1, VCP65-1 |
| GSM4952783 |
FU-UR-1, VCP67-1 |
| GSM4952784 |
FU-UR-1, TFE3-30-1 |
| GSM4952785 |
FU-UR-1, TFE3-31-1 |
| GSM4952786 |
FU-UR-1, dbl-65-30-1 |
| GSM4952787 |
FU-UR-1, dbl-67-31-1 |
| GSM4952788 |
FU-UR-1, SCR-2 |
| GSM4952789 |
FU-UR-1, VCP65-2 |
| GSM4952790 |
FU-UR-1, VCP67-2 |
| GSM4952791 |
FU-UR-1, TFE3-30-2 |
| GSM4952792 |
FU-UR-1, TFE3-31-2 |
| GSM4952793 |
FU-UR-1, dbl-65-30-2 |
| GSM4952794 |
FU-UR-1, dbl-67-31-2 |
| GSM4952795 |
FU-UR-1, SCR-3 |
| GSM4952796 |
FU-UR-1, VCP65-3 |
| GSM4952797 |
FU-UR-1, VCP67-3 |
| GSM4952798 |
FU-UR-1, TFE3-30-3 |
| GSM4952799 |
FU-UR-1, TFE3-31-3 |
| GSM4952800 |
FU-UR-1, dbl-65-30-3 |
| GSM4952801 |
FU-UR-1, dbl-67-31-3 |
| GSM4952810 |
FUUR1_1 0 hr |
| GSM4952811 |
FUUR1_2 0 hr |
| GSM4952812 |
FUUR1_3 2 hr |
| GSM4952813 |
FUUR1_4 2 hr |
| GSM4952814 |
FUUR1_5 24 hr |
| GSM4952815 |
FUUR1_6 24 hr |
| GSM4952816 |
FUUR1_7 48 hr |
| GSM4952817 |
FUUR1_8 48 hr |
| GSM4954778 |
HEK-GFP-1 |
| GSM4954779 |
HEK-FL-TFE3-1 |
| GSM4954780 |
HEK-AT3-I-1 |
| GSM4954781 |
HEK-AT3-II-1 |
| GSM4954782 |
HEK-Cdelta-FL-TFE3-1 |
| GSM4954783 |
HEK-Cdelta-AT3-I-1 |
| GSM4954784 |
HEK-Cdelta-AT3-II-1 |
| GSM4954785 |
HEK-GFP-2 |
| GSM4954786 |
HEK-FL-TFE3-2 |
| GSM4954787 |
HEK-AT3-I-2 |
| GSM4954788 |
HEK-AT3-II-2 |
| GSM4954789 |
HEK-Cdelta-FL-TFE3-2 |
| GSM4954790 |
HEK-Cdelta-AT3-I-2 |
| GSM4954791 |
HEK-Cdelta-AT3-II-2 |
| GSM4954792 |
HEK-GFP-3 |
| GSM4954793 |
HEK-FL-TFE3-3 |
| GSM4954794 |
HEK-AT3-I-3 |
| GSM4954795 |
HEK-AT3-II-3 |
| GSM4954796 |
HEK-Cdelta-FL-TFE3-3 |
| GSM4954797 |
HEK-Cdelta-AT3-I-3 |
| GSM4954798 |
HEK-Cdelta-AT3-II-3 |
| GSM4954799 |
ASPS1-0h-A |
| GSM4954800 |
ASPS1-2h-A |
| GSM4954801 |
ASPS1-24h-A |
| GSM4954802 |
ASPS1-48h-A |
| GSM4954803 |
ASPS1-0h-B |
| GSM4954804 |
ASPS1-2h-B |
| GSM4954805 |
ASPS1-24h-B |
| GSM4954806 |
ASPS1-48h-B |
| GSM4954807 |
ASPS1-0h-C |
| GSM4954808 |
ASPS1-2h-C |
| GSM4954809 |
ASPS1-24h-C |
| GSM4954810 |
ASPS1-48h-C |
| GSM4958101 |
ASPS1_VCP1 |
| GSM4958102 |
ASPS1_VCP2 |
| GSM4958103 |
ASPS1_VCP3 |
| GSM4958104 |
ASPS1_input1 |
| GSM4958105 |
ASPS1_input2 |
| GSM4958106 |
ASPS1_input3 |
| GSM5646384 |
siSCR-1 |
| GSM5646385 |
siSCR-2 |
| GSM5646386 |
siSCR-3 |
| GSM5646387 |
siTFE3-1 |
| GSM5646388 |
siTFE3-2 |
| GSM5646389 |
siVCP-1 |
| GSM5646390 |
siVCP-2 |
| GSM5646391 |
siSCR-4 |
| GSM5646392 |
siTFE3-3 |
| GSM5646393 |
siTFE3-4 |
| GSM5646394 |
siVCP-3 |
| GSM5646395 |
siVCP-4 |
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| This SuperSeries is composed of the following SubSeries:
|
| GSE162068 |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [HiChIP] |
| GSE162476 |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [mASPS_ChIP, ASPL_VCP_Pol2] |
| GSE162477 |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [mASPS_ChIP, histone_markers] |
| GSE162478 |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [hASPS_ChIP, ASPL_VCP_Pol2] |
| GSE162479 |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [hASPS_ChIP, histone_markers] |
| GSE162480 |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [Cell_lines_ChIP, FUUR1, 17934_FUUR1_KDs_H3K27ac] |
| GSE162481 |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [Cell_lines_ChIP, FUUR1, FUUR1_ASPL_POLII] |
| GSE162482 |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [Cell_lines_ChIP, FUUR1, FUUR1_VCP] |
| GSE162483 |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [Cell_lines_ChIP, ASPS1] |
| GSE162486 |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [RNA-Seq, ASPS1_KD] |
| GSE162488 |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [RNA-Seq, FUUR1_KD] |
| GSE162490 |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [RNA-Seq, FUUR_CB5083] |
| GSE162575 |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [RNA-Seq, 17637_HEK_cdelta] |
| GSE162576 |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [RNA-Seq, ASPS1_CB5083] |
| GSE162727 |
ASPSCR1-TFE3 reprograms transcription by organizing enhancers around hexameric VCP [ASPS1 VCP ChIP] |
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| Relations |
| BioProject |
PRJNA682383 |
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