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Series GSE162509 Query DataSets for GSE162509
Status Public on Jan 07, 2021
Title Multiple annealing and looping based amplification cycles for digital transcriptomics (MALBAC-DT) of single cells from the developing mouse cortex and hippocampus
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To study the dynamics of gene expression during postnatal development of the mouse forebrain, we performed MALBAC-DT on 3,517 single cells from the mouse cortex and hippocampus at different ages throughout the first 6 postnatal months.
 
Overall design We performed MALBAC-DT on 3,517 single cells.
 
Contributor(s) Tan L
Citation(s) 33484631
BioProject PRJNA679183
Submission date Dec 02, 2020
Last update date Apr 06, 2021
Contact name Longzhi Tan
E-mail(s) tanlongzhi@gmail.com
Organization name Harvard University
Department Chemistry and Chemical Biology
Lab Xiaoliang Sunney Xie
Street address 12 Oxford St
City Cambridge
State/province MA
ZIP/Postal code 02138
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (42)
GSM4953121 Cortex P1 B6 Plate 001
GSM4953122 Cortex P1 B6 Plate 002
GSM4953123 Cortex P1 B6 Plate 003
This SubSeries is part of SuperSeries:
GSE162511 Single-cell transcriptome and 3D genome atlas of the developing mouse brain
Relations
SRA SRP293065

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE162509_00README.md.txt 912 b (ftp)(http) TXT
GSE162509_UMIcount_mouse_decon_allGenes_ERCC.txt.gz 18.0 Mb (ftp)(http) TXT
GSE162509_UMIcount_mouse_decon_filtered_ERCC.tsv.gz 136.2 Kb (ftp)(http) TSV
GSE162509_UMIcount_mouse_decon_filtered_genes.tsv.gz 18.1 Mb (ftp)(http) TSV
GSE162509_cleanFqStat.txt.gz 113.9 Kb (ftp)(http) TXT
GSE162509_cleanFqStat_filter.txt.gz 157.7 Kb (ftp)(http) TXT
GSE162509_cleanFqSummary.txt.gz 1.9 Kb (ftp)(http) TXT
GSE162509_do_filter.r.gz 3.7 Kb (ftp)(http) R
GSE162509_exprStat_mouse_filter.txt.gz 103.2 Kb (ftp)(http) TXT
GSE162509_exprStat_star_mouse.txt.gz 67.0 Kb (ftp)(http) TXT
GSE162509_keep_DF.txt.gz 12.6 Kb (ftp)(http) TXT
GSE162509_kept_cell.txt.gz 8.5 Kb (ftp)(http) TXT
GSE162509_mapStat_mouse_filter.txt.gz 295.8 Kb (ftp)(http) TXT
GSE162509_mapStat_star_mouse.txt.gz 90.5 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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