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Series GSE16220 Query DataSets for GSE16220
Status Public on Dec 16, 2011
Title Profiling of antibodies against prostate cancer xenograft-released proteins
Platform organism Homo sapiens
Sample organism Mus musculus
Experiment type Protein profiling by protein array
Summary The present study describes a novel xenograft-based biomarker discovery platform and proves its usefulness in the discovery of novel serum markers for prostate cancer (PCa). By immunizing immuno-competent mice with serum from nude mice bearing PCa xenografts, an antibody response against xenograft-derived antigens was elicited. By probing protein microarrays with serum from immunized mice, several PCa-derived antigens were identified, of which a subset was successfully retrieved in serum from mice bearing PCa xenografts and validated in human serum samples of PCa patients. In conclusion, this novel method allows for the identification of low abundant cancer-derived serum proteins, circumventing dynamic range and host-response issues in standard patient cohort proteomics comparisons.
 
Overall design To perform a large-scale identification of antibodies generated against human PCa-derived proteins in the serum of immunized mice, sera from mice immunized with either depleted serum, full serum or both from PC346 and PC339-bearing mice as well as preimmune serum and serum from mice immunized with normal mouse serum were incubated onto ProtoArrays. These ProtoArrays contain approximately 8,000 partial and full-length human proteins, expressed as N-terminal glutathione S-transferase (GST) fusion proteins. To detect antibodies bound to spotted proteins, ProtoArrays were developed using a fluorescent labeled secondary antibody. Before being used for immunization, serum from xenografted mice was not treated (full) or depleted for most abundant proteins (depleted). Two arrays were hybridized with pre-immune serum and one array with serum from an immune competent mouse that was immunized with serum from a nude mouse. Six arrays were performed using serum from immune competent mice that were immunized with serum from xenograft-bearing nude mice.
 
Contributor(s) Jansen F, Jenster G, van Rijswijk A, Teubel W, Staal F, van Weerden W
Citation(s) 22136385
Submission date May 25, 2009
Last update date Mar 21, 2012
Contact name Guido Jenster
E-mail(s) g.jenster@erasmusmc.nl
Phone 31107043672
Organization name Erasmus MC
Department Urology
Lab JNI, Be362a
Street address P.O. Box 2040
City Rotterdam
ZIP/Postal code 3000CA
Country Netherlands
 
Platforms (1)
GPL8590 Invitrogen ProtoArray v4 human protein microarray lot HA20085
Samples (9)
GSM407326 PC339_immunized_depleted
GSM407327 PC339_immunized_depleted_full
GSM407328 PC339_immunized_full
Relations
BioProject PRJNA117161

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE16220_RAW.tar 5.3 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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