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GEO accession:
Series GSE162180
Query DataSets for GSE162180
Status
Public on Jan 27, 2021
Title
The identity of human tissue-emigrant CD8+ T cells
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33306960
Submission date
Nov 25, 2020
Last update date
Apr 28, 2021
Contact name
Marcus Buggert
E-mail(s)
marcus.buggert@ki.se
Organization name
Karolinska Institutet
Department
Microbiology
Street address
C2:94; Karolinska Universitetssjukhuset Huddinge
City
Stockholm
State/province
PA
ZIP/Postal code
141 86
Country
Sweden
Platforms (3)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL21697
NextSeq 550 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (80)
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GSM4933103
scRNAseq of Blood memory CD8+ T-cells from HUP213
GSM4933104
scRNAseq of TDL memory CD8+ T-cells from HUP213
GSM4933105
scRNAseq of Blood memory CD8+ T-cells from HUP217
GSM4933106
scRNAseq of TDL memory CD8+ T-cells from HUP217
GSM4933107
scRNAseq of Blood memory CD8+ T-cells from HUP222
GSM4933108
scRNAseq of TDL memory CD8+ T-cells from HUP222
GSM4933109
scRNAseq of Blood HIV-specific CD8+ T-cells (with B-cell spike in) from HIVPosSmpl1
GSM4933110
scRNAseq of TDL HIV-specific CD8+ T-cells (with B-cell spike in) from HIVPosSmpl1
GSM4933111
scRNAseq of Blood CMV-specific CD8+ T-cells from HIVPosSmpl2
GSM4933112
scRNAseq of TDL CMV-specific CD8+ T-cells (with B-cell spike in) from HIVPosSmpl2
GSM4933113
scRNAseq of Blood HIV-specific CD8+ T-cells (with B-cell spike in) from HIVPosSmpl2
GSM4933114
scRNAseq of TDL HIV-specific CD8+ T-cells from HIVPosSmpl2
GSM4933115
scTCRseq of Blood memory CD8+ T-cells from HUP213
GSM4933116
scTCRseq of TDL memory CD8+ T-cells from HUP213
GSM4933117
scTCRseq of Blood memory CD8+ T-cells from HUP217
GSM4933118
scTCRseq of TDL memory CD8+ T-cells from HUP217
GSM4933119
scTCRseq of Blood memory CD8+ T-cells from HUP222
GSM4933120
scTCRseq of TDL memory CD8+ T-cells from HUP222
GSM4933121
scTCRseq of Blood HIV-specific CD8+ T-cells (with B-cell spike in) from HIVPosSmpl1
GSM4933122
scTCRseq of TDL HIV-specific CD8+ T-cells (with B-cell spike in) from HIVPosSmpl1
GSM4933123
scTCRseq of Blood CMV-specific CD8+ T-cells from HIVPosSmpl2
GSM4933124
scTCRseq of TDL CMV-specific CD8+ T-cells (with B-cell spike in) from HIVPosSmpl2
GSM4933125
scTCRseq of Blood HIV-specific CD8+ T-cells (with B-cell spike in) from HIVPosSmpl2
GSM4933126
scTCRseq of TDL HIV-specific CD8+ T-cells from HIVPosSmpl2
GSM4933127
bulk_P1_Naive
GSM4933128
bulk_P1_CM
GSM4933129
bulk_P1_EM
GSM4933130
bulk_P1_EMRA
GSM4933131
bulk_P2_Naive
GSM4933132
bulk_P2_CM
GSM4933133
bulk_P2_EM
GSM4933134
bulk_P2_EMRA
GSM4933135
bulk_P3_Naive
GSM4933136
bulk_P3_CM
GSM4933137
bulk_P3_EM
GSM4933138
bulk_P3_EMRA
GSM4944303
A_LV_S101: LN_CD8_naive_rep1
GSM4944304
A_LV_S102: LN_EM_rep1
GSM4944305
A_LV_S106: LN_EM_rep2
GSM4944306
A_LV_S109: LN_EM_rep3
GSM4944307
A_LV_S126: TDL_CD8_naive_rep1
GSM4944308
A_LV_S127: TDL_EM_rep1
GSM4944309
A_LV_S128: TDL_TEMRA_rep1
GSM4944310
A_LV_S131: TDL_EM_rep2
GSM4944311
A_LV_S132: TDL_TEMRA_rep2
GSM4944312
A_LV_S135: TDL_EM_rep3
GSM4944313
A_LV_S136: TDL_TEMRA_rep3
GSM4944314
A9: CD8_LN_CD69neg_rep1
GSM4944315
B9: CD8_LN_CD69neg_rep2
GSM4944316
C9: CD8_LN_CD69neg_rep3
GSM4944317
A8: CD8_LN_CD69neg_rep4
GSM4944318
B8: CD8_LN_CD69neg_rep5
GSM4944319
C8: CD8_LN_CD69neg_rep6
GSM4944320
A7: CD8_LN_CM_rep1
GSM4944321
B7: CD8_LN_CM_rep2
GSM4944322
C7: CD8_LN_CM_rep3
GSM4944323
A_10: CD8_LN_CXCR5pos_rep1
GSM4944324
B_10: CD8_LN_CXCR5pos_rep2
GSM4944325
C_10: CD8_LN_CXCR5pos_rep3
GSM4944326
A5: CD8_LN_EM_rep1
GSM4944327
B5: CD8_LN_EM_rep2
GSM4944328
C5: CD8_LN_EM_rep3
GSM4944329
A6: CD8_LN_Naive_rep1
GSM4944330
B6: CD8_LN_Naive_rep2
GSM4944331
C6: CD8_LN_Naive_rep3
GSM4944332
D7: CD8_TDL_CM_rep1
GSM4944333
E7: CD8_TDL_CM_rep2
GSM4944334
F7: CD8_TDL_CM_rep3
GSM4944335
D9: CD8_TDL_CXCR5pos_rep1
GSM4944336
E9: CD8_TDL_CXCR5pos_rep2
GSM4944337
F9: CD8_TDL_CXCR5pos_rep3
GSM4944338
D5: CD8_TDL_EM_rep1
GSM4944339
E5: CD8_TDL_EM_rep2
GSM4944340
F5: CD8_TDL_EM_rep3
GSM4944341
D6: CD8_TDL_Naive_rep1
GSM4944342
E6: CD8_TDL_Naive_rep2
GSM4944343
F6: CD8_TDL_Naive_rep3
GSM4944344
D8: CD8_TDL_TEMRA_rep1
GSM4944345
E8: CD8_TDL_TEMRA_rep2
GSM4944346
F8: CD8_TDL_TEMRA_rep3
This SuperSeries is composed of the following SubSeries:
GSE162097
The identity of human tissue-emigrant CD8+ T cells (scRNAseq, scTCRseq, bulk RNA-seq)
GSE162178
Epigenetic landscape of CD8 T cell subsets
GSE162179
Transcriptional landscape of CD8 T cell subsets
Relations
BioProject
PRJNA680796
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Supplementary file
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GSE162180_RAW.tar
213.7 Mb
(http)
(custom)
TAR (of TAR, TXT)
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