|
| Status |
Public on Mar 31, 2021 |
| Title |
Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
|
| Summary |
In this study, we map chromatin accessibility and gene expression at single-cell resolution in the developing human cerebral cortex.
|
| |
|
| Overall design |
We generated single-cell ATAC-seq and single-cell RNA-seq libraries from 4 samples of mid-gestation human cerebral cortex, spanning 8 weeks of development
**RAW DATA not provided due to patient privacy**
|
| |
|
| Contributor(s) |
Trevino AE, Müller F, Andersen J, Sundaram L, Kathiria A, Shcherbina A, Farh K, Chang HY, Pașca AM, Kundaje A, Pașca SP, Greenleaf WJ |
| Citation(s) |
34390642 |
| Submission date |
Nov 25, 2020 |
| Last update date |
Sep 17, 2021 |
| Contact name |
Alex E Trevino |
| E-mail(s) |
alexandro.trevino@gmail.com
|
| Phone |
6086988661
|
| Organization name |
Enable Medicine
|
| Department |
Genetics
|
| Lab |
William Greenleaf
|
| Street address |
279 Campus Drive West
|
| City |
Stanford |
| State/province |
California |
| ZIP/Postal code |
94304 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
|
| Samples (24)
|
|
| Relations |
| BioProject |
PRJNA680789 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE162170_atac_cell_metadata.txt.gz |
1.9 Mb |
(ftp)(http) |
TXT |
| GSE162170_atac_chromVAR_TF_activities.tsv.gz |
144.4 Mb |
(ftp)(http) |
TSV |
| GSE162170_atac_consensus_peaks.bed.gz |
5.0 Mb |
(ftp)(http) |
BED |
| GSE162170_atac_counts.tsv.gz |
678.4 Mb |
(ftp)(http) |
TSV |
| GSE162170_atac_gene_activities.tsv.gz |
2.8 Gb |
(ftp)(http) |
TSV |
| GSE162170_atac_sample_qc.tsv.gz |
1.7 Kb |
(ftp)(http) |
TSV |
| GSE162170_multiome_atac_consensus_peaks.txt.gz |
17.5 Mb |
(ftp)(http) |
TXT |
| GSE162170_multiome_atac_counts.tsv.gz |
142.9 Mb |
(ftp)(http) |
TSV |
| GSE162170_multiome_atac_gene_activities.tsv.gz |
793.3 Mb |
(ftp)(http) |
TSV |
| GSE162170_multiome_cell_metadata.txt.gz |
480.6 Kb |
(ftp)(http) |
TXT |
| GSE162170_multiome_cluster_names.txt.gz |
278 b |
(ftp)(http) |
TXT |
| GSE162170_multiome_rna_counts.tsv.gz |
23.7 Mb |
(ftp)(http) |
TSV |
| GSE162170_multiome_rna_logcounts.tsv.gz |
178.4 Mb |
(ftp)(http) |
TSV |
| GSE162170_multiome_spliced_rna_counts.tsv.gz |
10.6 Mb |
(ftp)(http) |
TSV |
| GSE162170_multiome_unspliced_rna_counts.tsv.gz |
14.9 Mb |
(ftp)(http) |
TSV |
| GSE162170_rna_ambiguous_counts.tsv.gz |
32.8 Mb |
(ftp)(http) |
TSV |
| GSE162170_rna_cell_metadata.txt.gz |
2.8 Mb |
(ftp)(http) |
TXT |
| GSE162170_rna_cell_names.txt.gz |
265.6 Kb |
(ftp)(http) |
TXT |
| GSE162170_rna_counts.tsv.gz |
133.1 Mb |
(ftp)(http) |
TSV |
| GSE162170_rna_sample_qc.tsv.gz |
814 b |
(ftp)(http) |
TSV |
| GSE162170_rna_spliced_counts.tsv.gz |
107.9 Mb |
(ftp)(http) |
TSV |
| GSE162170_rna_unspliced_counts.tsv.gz |
99.8 Mb |
(ftp)(http) |
TSV |
| Processed data are available on Series record |
| Raw data not provided for this record |
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