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Series GSE162170 Query DataSets for GSE162170
Status Public on Mar 31, 2021
Title Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary In this study, we map chromatin accessibility and gene expression at single-cell resolution in the developing human cerebral cortex.
Overall design We generated single-cell ATAC-seq and single-cell RNA-seq libraries from 4 samples of mid-gestation human cerebral cortex, spanning 8 weeks of development

**RAW DATA not provided due to patient privacy**
Contributor(s) Trevino AE, Müller F, Andersen J, Sundaram L, Kathiria A, Shcherbina A, Farh K, Chang HY, Pașca AM, Kundaje A, Pașca SP, Greenleaf WJ
Citation(s) 34390642
Submission date Nov 25, 2020
Last update date Sep 17, 2021
Contact name Alex E Trevino
Phone 6086988661
Organization name Enable Medicine
Department Genetics
Lab William Greenleaf
Street address 279 Campus Drive West
City Stanford
State/province California
ZIP/Postal code 94304
Country USA
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (24)
GSM4944143 rna_hft_w16_p7_r1
GSM4944144 rna_hft_w16_p7_r2
GSM4944145 rna_hft_w20_p3_r1
BioProject PRJNA680789

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE162170_atac_cell_metadata.txt.gz 1.9 Mb (ftp)(http) TXT
GSE162170_atac_chromVAR_TF_activities.tsv.gz 144.4 Mb (ftp)(http) TSV
GSE162170_atac_consensus_peaks.bed.gz 5.0 Mb (ftp)(http) BED
GSE162170_atac_counts.tsv.gz 678.4 Mb (ftp)(http) TSV
GSE162170_atac_gene_activities.tsv.gz 2.8 Gb (ftp)(http) TSV
GSE162170_atac_sample_qc.tsv.gz 1.7 Kb (ftp)(http) TSV
GSE162170_multiome_atac_consensus_peaks.txt.gz 17.5 Mb (ftp)(http) TXT
GSE162170_multiome_atac_counts.tsv.gz 142.9 Mb (ftp)(http) TSV
GSE162170_multiome_atac_gene_activities.tsv.gz 793.3 Mb (ftp)(http) TSV
GSE162170_multiome_cell_metadata.txt.gz 480.6 Kb (ftp)(http) TXT
GSE162170_multiome_cluster_names.txt.gz 278 b (ftp)(http) TXT
GSE162170_multiome_rna_counts.tsv.gz 23.7 Mb (ftp)(http) TSV
GSE162170_multiome_rna_logcounts.tsv.gz 178.4 Mb (ftp)(http) TSV
GSE162170_multiome_spliced_rna_counts.tsv.gz 10.6 Mb (ftp)(http) TSV
GSE162170_multiome_unspliced_rna_counts.tsv.gz 14.9 Mb (ftp)(http) TSV
GSE162170_rna_ambiguous_counts.tsv.gz 32.8 Mb (ftp)(http) TSV
GSE162170_rna_cell_metadata.txt.gz 2.8 Mb (ftp)(http) TXT
GSE162170_rna_cell_names.txt.gz 265.6 Kb (ftp)(http) TXT
GSE162170_rna_counts.tsv.gz 133.1 Mb (ftp)(http) TSV
GSE162170_rna_sample_qc.tsv.gz 814 b (ftp)(http) TSV
GSE162170_rna_spliced_counts.tsv.gz 107.9 Mb (ftp)(http) TSV
GSE162170_rna_unspliced_counts.tsv.gz 99.8 Mb (ftp)(http) TSV
Processed data are available on Series record
Raw data not provided for this record

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