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Series GSE161974 Query DataSets for GSE161974
Status Public on Jan 21, 2021
Title Next Generation Sequencing Facilitates Quantitative Analysis of oral epithelial cells from SPF and germ free (GF) Wild Type mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: RNAseq analysis to identify differentiatlly expressed genes due to the presnce of microbiota
 
Overall design Oral epithelial cells mRNA profile of adult germ free and SPF mice, 4 animals in each group.
 
Contributor(s) Hovav A
Citation(s) 33412104
Submission date Nov 23, 2020
Last update date Dec 20, 2021
Contact name Khaled Zubeidat
Organization name The Hebrew University of Jerusalem
Street address Faculty of Medicine, Ein-Kerem
City Jerusalem
ZIP/Postal code 91120
Country Israel
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (8)
GSM4928907 SPF 1
GSM4928908 SPF 3
GSM4928909 SPF 4
Relations
BioProject PRJNA680242
SRA SRP293757

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE161974_DESeq2_final_GF-SPF.xlsx 9.8 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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