|
| Status |
Public on Nov 01, 2021 |
| Title |
Small RNA sequencing of human LDL |
| Organism |
Homo sapiens |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Adapter trimmed fastq files, non-redundant identical reads and the results of their alignment using the TIGER pipeline.
|
| |
|
| Overall design |
Total RNA extracted from density-isolated LDL were converted to cDNA using the NextFlex Small RNA Library Kit V3 and sequenced on an Illumina NextSeq500 instrument.
|
| |
|
| Contributor(s) |
Allen RM, Vickers KC |
| Citation(s) |
36474072 |
| |
| Submission date |
Nov 02, 2020 |
| Last update date |
Nov 13, 2023 |
| Contact name |
Ryan M Allen |
| E-mail(s) |
ryan.m.allen@vumc.org
|
| Phone |
3146109328
|
| Organization name |
Vanderbilt University Medical Center
|
| Department |
Medicine
|
| Lab |
Vickers
|
| Street address |
2220 Pierce Ave
|
| City |
Nashville |
| State/province |
TN |
| ZIP/Postal code |
37232 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (20)
|
|
| This SubSeries is part of SuperSeries: |
| GSE206859 |
LDL delivery of microbial small RNAs drives atherosclerosis through macrophage TLR8 |
|
| Relations |
| BioProject |
PRJNA673805 |
| SRA |
SRP290793 |
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