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Series GSE160351 Query DataSets for GSE160351
Status Public on Oct 29, 2020
Title Macrophage expression and prognostic significance of the long pentraxin PTX3 in COVID-19
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary PTX3 is an essential component of humoral innate immunity, involved in resistance to selected pathogens and in the regulation of inflammation1-3. The present study was designed to assess the presence and significance of PTX3 in COVID-194-7. RNA-seq analysis of peripheral blood mononuclear cells, single-cell bioinformatics analysis and immunohistochemistry of lung autopsy samples revealed that myelomonocytic cells and endothelial cells express high levels of PTX3 in COVID-19 patients. Increased plasma concentrations of PTX3 were detected in 96 COVID-19 patients. PTX3 emerged as a strong independent predictor of 28-day mortality in multivariable analysis, better than conventional markers of inflammation, in hospitalized COVID-19 patients. The prognostic significance of PTX3 abundance for mortality was confirmed in a second independent cohort (54 patients). Thus, circulating and lung myelomonocytic cells and endothelial cells are a major source of PTX3, and PTX3 plasma concentration can serve as an independent strong prognostic indicator of short-term mortality in COVID-19.
 
Overall design Monocytes were isolated from peripheral blood samples of three healthy donors and six COVID-19 patients and RNA expression was measured with total RNA-Seq.
 
Contributor(s) Mantovani A, Garlanda C, Bottazzi B, Mapelli SN
Citation(s) 33208929, 34145258
Submission date Oct 28, 2020
Last update date Jul 08, 2021
Contact name sarah natalia mapelli
E-mail(s) sarah.mapelli@humanitasresearch.it
Organization name Humanitas research
Department Experimental Immunopathology
Lab Experimental Immunopathology
Street address Via Rita Levi Montalcini 4
City Pieve Emanuele
State/province Milan
ZIP/Postal code 20090
Country Italy
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (9)
GSM4872020 Healthy Control Lib_CGA-08_S8
GSM4872021 Healthy Control Lib_CGA-09_S9
GSM4872022 Healthy Control Lib_CGA-10_S10
Relations
BioProject PRJNA672981
SRA SRP289541

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Supplementary file Size Download File type/resource
GSE160351_DESEQ2_normalized_counts.txt.gz 1.4 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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