GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE16013 Query DataSets for GSE16013
Status Public on May 12, 2009
Title Genome-wide maps of chromatin state in staged Drosophila embryos, ChIP-seq
Project modENCODE
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. It contains ChIP-seq data generated on Solexa Genome Analyzer for 6 Histone modifications (H3K9me3, H3K27me3, H3K4me3, H3K4me1, H3K27Ac, H3K9Ac), PolII and CBP/p300. Each factor has been studied for 12 different time-points of Drosophila development.

Keywords: Epigenetics

For data usage terms and conditions, please refer to and
Overall design For each combination of time-point and antibody, triplicate ChIP experiments have been performed and hybridized on Agilent 244K arrays. The hybridizations have been verified by sequencing one replicate of IP and one replicate of Input following Solexa sequencing procedure.
Web link
Contributor(s) Negre N, Morrison CA, Shah PK, Bild NA, White KP
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA63463
Submission date May 07, 2009
Last update date May 15, 2019
Contact name Kevin P. White
Organization name University of Chicago
Department Institute for Genomics and Systems Biology
Street address 900 E. 57th STR. 10th FL.
City Chicago
State/province IL
ZIP/Postal code 60615
Country USA
Platforms (1)
GPL9058 Illumina Genome Analyzer (Drosophila melanogaster)
Samples (114)
GSM400656 E0-4_H3K4Me3_ChIPSeq_1
GSM400657 E0-4_INPUT
GSM400658 E16-20_H3K4Me3_ChIPSeq_1
This SubSeries is part of SuperSeries:
GSE15292 Drosophila at different time points of development: ChIP-chip, ChIP-seq, RNA-seq
SRA SRP001424

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE16013_RAW.tar 1.8 Gb (http)(custom) TAR (of BED, BEDGRAPH)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap