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GEO accession:
Series GSE158673
Query DataSets for GSE158673
Status
Public on Oct 19, 2020
Title
EBF1 and Pax5 safeguard leukemic transformation by limiting IL-7 signaling, Myc expression and folate metabolism
Organism
Mus musculus
Experiment type
Expression profiling by array
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33004416
Submission date
Sep 28, 2020
Last update date
Oct 19, 2020
Contact name
Senthilkumar Ramamoorthy
E-mail(s)
senthilkumar@ie-freiburg.mpg.de
Phone
00497615108731
Organization name
Max Planck Institute of Immunobiology and Epigenetics
Department
Cellular & Molecular Immunology
Lab
Laboratory Rudolf Grosschedl
Street address
Stübeweg 51
City
Freiburg
ZIP/Postal code
D-79108
Country
Germany
Platforms (5)
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GPL7202
Agilent-014868 Whole Mouse Genome Microarray 4x44K G4122F (Probe Name version)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
GPL19057
Illumina NextSeq 500 (Mus musculus)
GPL21493
Illumina HiSeq 3000 (Mus musculus)
GPL24247
Illumina NovaSeq 6000 (Mus musculus)
Samples (110)
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GSM4804939
dHet-B-ALL-686-Rep1 (array)
GSM4804940
dHet-B-ALL-686-Rep2 (array)
GSM4804941
dHet-B-ALL-713-Rep1 (array)
GSM4804942
dHet-B-ALL-713-Rep2 (array)
GSM4804943
dHet-B-ALL-760-Rep1 (array)
GSM4804944
dHet-B-ALL-760-Rep2 (array)
GSM4804945
dHet-proB-Rep1 (array)
GSM4804946
dHet-proB-Rep2 (array)
GSM4804947
wt-proB-Rep1 (array)
GSM4804948
wt-proB-Rep2 (array)
GSM4805160
dHet-B-ALL-686-Rep1 (RNA-seq)
GSM4805161
dHet-B-ALL-686-Rep2 (RNA-seq)
GSM4805162
dHet-B-ALL-713-Rep1 (RNA-seq)
GSM4805163
dHet-B-ALL-713-Rep2 (RNA-seq)
GSM4805164
dHet-B-ALL-760-Rep1 (RNA-seq)
GSM4805165
dHet-B-ALL-760-Rep2 (RNA-seq)
GSM4805166
dHet-proB-Rep1 (RNA-seq)
GSM4805167
dHet-proB-Rep2 (RNA-seq)
GSM4805168
dHet-proB-Rep3 (RNA-seq)
GSM4805169
wt-proB-Rep1 (RNA-seq)
GSM4805170
wt-proB-Rep2 (RNA-seq)
GSM4805366
ATACSeq in dHet-B-ALL-713
GSM4805367
ATACSeq in dHet-B-ALL-3313
GSM4805368
ATACSeq in dHet-proB-Rep1
GSM4805369
ATACSeq in dHet-proB-Rep2
GSM4805370
ATACSeq in wt-proB-Rep1
GSM4805371
ATACSeq in wt-proB-Rep2
GSM4805372
EBF1-ChIP in dHet-B-ALL-713
GSM4805373
EBF1-ChIP in dHet-B-ALL-760
GSM4805374
EBF1-ChIP in dHet-proB-Rep1
GSM4805375
EBF1-ChIP_Rep1
GSM4805376
EBF1-ChIP in dHet-proB-Rep2
GSM4805377
EBF1-ChIP_Rep2
GSM4805378
Input for the EBF1-ChIP in dHet-B-ALL-713
GSM4805379
Input for the EBF1-ChIP in dHet-B-ALL-760
GSM4805380
Input for the EBF1-ChIP in dHet-proB-Rep1
GSM4805381
Input for the EBF1-ChIP in dHet-proB-Rep2
GSM4805382
Pax5-ChIP in dHet-B-ALL-713
GSM4805383
Pax5-ChIP in dHet-proB
GSM4805384
Pax5-ChIP_proB
GSM4805385
Input for Pax5-ChIP in dHet-B-ALL-713
GSM4805386
Input for Pax5-ChIP in dHet-proB
GSM4811537
A499_dHet_FrA_1
GSM4811538
A499_dHet_FrA_2
GSM4811539
A499_dHet_FrA_3
GSM4811540
A499_dHet_FrA_4
GSM4811541
A499_dHet_FrB_5
GSM4811542
A499_dHet_FrB_6
GSM4811543
A499_dHet_FrB_7
GSM4811544
A499_dHet_FrB_8
GSM4811545
A499_WT_FrA_1
GSM4811546
A499_WT_FrA_2
GSM4811547
A499_WT_FrA_3
GSM4811548
A499_WT_FrA_4
GSM4811549
A499_WT_FrB_5
GSM4811550
A499_WT_FrB_6
GSM4811551
A499_WT_FrB_7
GSM4811552
A499_WT_FrB_8
GSM4811553
A551_WT_FrC1_1
GSM4811554
A551_WT_FrC2_2
GSM4811555
A551_WT_FrC3_3
GSM4811556
A551_WT_FrC4_6
GSM4811557
A551_WT_FrC5_7
GSM4811558
A700_WT_FrA_1
GSM4811559
A700_WT_FrA_2
GSM4811560
A700_WT_FrA_3
GSM4811561
A700_WT_FrA_4
GSM4811562
A700_WT_FrB_1
GSM4811563
A700_WT_FrB_2
GSM4811564
A700_WT_FrB_3-4
GSM4811565
A700_WT_FrC_1
GSM4811566
A700_WT_FrC_2
GSM4811567
A700_WT_FrC_3
GSM4811568
A700_WT_FrC_4
GSM4811569
A701_dHet_FrA_1
GSM4811570
A701_dHet_FrA_2
GSM4811571
A701_dHet_FrA_3
GSM4811572
A701_dHet_FrA_4
GSM4811573
A701_dHet_FrB_1
GSM4811574
A701_dHet_FrB_2
GSM4811575
A701_dHet_FrB_3
GSM4811576
A701_dHet_FrB_4
GSM4811577
A701_dHet_FrC_1
GSM4811578
A701_dHet_FrC_2
GSM4811579
A701_dHet_FrC_3
GSM4811580
A701_dHet_FrC_4
GSM4811581
A703_CLP_dHet_1
GSM4811582
A703_CLP_dHet_2
GSM4811583
A703_CLP_dHet_3
GSM4811584
A703_CLP_dHet_4
GSM4811585
A703_CLP_WT_1
GSM4811586
A703_CLP_WT_2
GSM4811587
A703_CLP_WT_3
GSM4811588
A703_CLP_WT_4
GSM4811589
Leuk_blood_EP1016_1
GSM4811590
Leuk_blood_EP1016_2
GSM4811591
Leuk_BM_EP1016_3
GSM4811592
Leuk_BM_EP1016_4
GSM4811593
Leuk_BM_EP1016_p2_1
GSM4811594
Leuk_BM_EP1016_p2_2
GSM4811595
Leuk_BM_EP1016_p2_3
GSM4811596
Leuk_BM_EP1016_p2_4
GSM4811597
Leuk_spleen_EP1016_p1_1
GSM4811598
Leuk_spleen_EP1016_p1_2
GSM4811599
Leuk_spleen_EP1016_p1_3
GSM4811600
Leuk_spleen_EP1016_p1_4
GSM4811601
Leuk_spleen_EP1016_p2_1_4
GSM4811602
Leuk_spleen_EP1016_p2_2_5
GSM4811603
Leuk_spleen_EP1016_p2_3_6
GSM4811604
Leuk_spleen_EP1016_p2_4_7
This SuperSeries is composed of the following SubSeries:
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GSE158645
Microarray analysis to unravel molecular networks driving leukemia in Ebf1+/- Pax5+/- (dHet) B-ALL mice
GSE158661
RNASeq analysis to unravel molecular networks driving leukemia in Ebf1+/-Pax5+/- (dHet) B-ALL mice
GSE158671
ATACSeq and genome-wide binding profile of EBF1 and Pax5 to unravel molecular networks driving leukemia in Ebf1+/-Pax5+/- (dHet) B-ALL mice.
GSE158827
Single-cell RNASeq analysis to unravel molecular networks driving leukemia in Ebf1+/-Pax5+/- (dHet) B-ALL mice
Relations
BioProject
PRJNA666168
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE158673_RAW.tar
490.6 Mb
(http)
(custom)
TAR (of BEDGRAPH, CSV, TXT)
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