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Series GSE156692 Query DataSets for GSE156692
Status Public on Nov 25, 2020
Title Identification of cellular context sensitive regulatory variation in mouse genomes
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary RNA-seq and DHS mapping in hybrid mouse kidney, liver, lung, and B cells
 
Overall design 138 DNase-seq and 17 RNA-seq samples collected from 4 tissues in 5 hybrid mouse strains
 
Contributor(s) Maurano MT
Citation(s) 33990600
NIH grant(s)
Grant ID Grant title Affiliation Name
U54 HG007010 A Comprehensive Catalog of Dnasel Hypersensitive Sites ALTIUS INSTITUTE FOR BIOMEDICAL SCIENCES JOHN A STAMATOYANNOPOULOS
S10 OD017999 Illumina HiSeq 2500 Sequencer UNIVERSITY OF WASHINGTON JOHN A STAMATOYANNOPOULOS
Submission date Aug 23, 2020
Last update date May 25, 2021
Contact name Matthew T Maurano
E-mail(s) maurano@nyu.edu
Organization name NYU School of Medicine
Department Institute for Systems Genetics
Lab Maurano
Street address 435 East 30th Street
City New York
State/province NY
ZIP/Postal code 10016
Country USA
 
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (158)
GSM4742277 DNAse_seq-B6x129-Lung-DS32746C
GSM4742278 DNAse_seq-B6x129-Lung-DS32747A
GSM4742279 DNAse_seq-B6x129-Liver-DS32752A
Relations
BioProject PRJNA658784
SRA SRP278514

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE156692_B6x129-Bcell.hotspots.fdr0.05.bed.gz 1.8 Mb (ftp)(http) BED
GSE156692_B6x129-Kidney.hotspots.fdr0.05.bed.gz 3.7 Mb (ftp)(http) BED
GSE156692_B6x129-Liver.hotspots.fdr0.05.bed.gz 4.4 Mb (ftp)(http) BED
GSE156692_B6x129-Lung.hotspots.fdr0.05.bed.gz 4.0 Mb (ftp)(http) BED
GSE156692_B6xC3H-Bcell.hotspots.fdr0.05.bed.gz 1.2 Mb (ftp)(http) BED
GSE156692_B6xC3H-Kidney.hotspots.fdr0.05.bed.gz 3.1 Mb (ftp)(http) BED
GSE156692_B6xC3H-Liver.hotspots.fdr0.05.bed.gz 3.3 Mb (ftp)(http) BED
GSE156692_B6xC3H-Lung.hotspots.fdr0.05.bed.gz 2.3 Mb (ftp)(http) BED
GSE156692_B6xCAST-Bcell.hotspots.fdr0.05.bed.gz 2.4 Mb (ftp)(http) BED
GSE156692_B6xCAST-Kidney.hotspots.fdr0.05.bed.gz 3.5 Mb (ftp)(http) BED
GSE156692_B6xCAST-Liver.hotspots.fdr0.05.bed.gz 3.5 Mb (ftp)(http) BED
GSE156692_B6xCAST-Lung.hotspots.fdr0.05.bed.gz 4.3 Mb (ftp)(http) BED
GSE156692_B6xPWK-Bcell.hotspots.fdr0.05.bed.gz 2.0 Mb (ftp)(http) BED
GSE156692_B6xPWK-Kidney.hotspots.fdr0.05.bed.gz 3.5 Mb (ftp)(http) BED
GSE156692_B6xPWK-Liver.hotspots.fdr0.05.bed.gz 3.7 Mb (ftp)(http) BED
GSE156692_B6xPWK-Lung.hotspots.fdr0.05.bed.gz 3.0 Mb (ftp)(http) BED
GSE156692_B6xSPRET-Bcell.hotspots.fdr0.05.bed.gz 1.4 Mb (ftp)(http) BED
GSE156692_B6xSPRET-Kidney.hotspots.fdr0.05.bed.gz 2.9 Mb (ftp)(http) BED
GSE156692_B6xSPRET-Liver.hotspots.fdr0.05.bed.gz 3.2 Mb (ftp)(http) BED
GSE156692_B6xSPRET-Lung.hotspots.fdr0.05.bed.gz 2.6 Mb (ftp)(http) BED
GSE156692_RAW.tar 18.3 Gb (http)(custom) TAR (of BED, BW, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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