|
| Status |
Public on Oct 15, 2020 |
| Title |
BS-Seq for oschz1 mutant |
| Organism |
Oryza sativa |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
At genome-wide level, loss of OsChz1 causes mis-regulation of thousands of genes and broad alterations of nucleosome occupancy as well as reduction of H2A.Z-enrichment within chromatin along the gene body and at TSS. While OsChz1 associates with chromatin regions enriched of repressive histone marks (H3K27me3 and H4K4me2), its loss does not affect the genome landscape of DNA methylation.
|
| |
|
| Overall design |
2 geneotype with 2 replicates
|
| |
|
| Contributor(s) |
Yin L, Du K, Dong A, Shen W |
| Citation(s) |
33177521 |
| |
| Submission date |
Jul 28, 2020 |
| Last update date |
Nov 24, 2020 |
| Contact name |
Liufan Yin |
| E-mail(s) |
17210700050@fudan.edu.cn
|
| Phone |
18621060962
|
| Organization name |
Fudan University
|
| Department |
School of Life Science
|
| Street address |
No. 2005, Songhu Road
|
| City |
Shanghai |
| State/province |
Shanghai |
| ZIP/Postal code |
200438 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL28757 |
Illumina HiSeq 3000 (Oryza sativa) |
|
| Samples (4)
|
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| This SubSeries is part of SuperSeries: |
| GSE155269 |
OsChz1 acts as a histone chaperone in modulating chromatin organization and genome function in rice |
|
| Relations |
| BioProject |
PRJNA649227 |
| SRA |
SRP273952 |
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