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| Status |
Public on Oct 23, 2020 |
| Title |
MicroRNAs differential expression under submergence, drought and alternated stress in maize and teosinte |
| Organisms |
Zea mays subsp. parviglumis; Zea mays subsp. mays |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
In this work, we performed high throughput sequencing of small RNA libraries in maize (Zea mays ssp. mays) and teosinte (Zea mays ssp. parviglumis) to investigate the response mediated by miRNAs in these plants under control conditions, submergence, drought and alternated drought-submergence or submergence-drought stress. After Illumina sequencing of 8 small RNA libraries, we obtained from 16,139,354 to 46,522,229 raw reads across the libraries. Bioinformatic analysis identified 88 maize miRNAs and 76 miRNAs from other plants differentially expressed in maize and/or in teosinte in response to at least one of the treatments, and revealed that a larger set of miRNAs were regulated in maize than in teosinte in response to submergence and drought stress.
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| Overall design |
MicroRNA expression profiling in the response to submergence, drought and alternated stress in maize and teosinte
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| Contributor(s) |
Sepúlveda-García EB, Pulido-Barajas JF, Huerta-Heredia AA, Peña-Castro JM, Liu R, Barrera-Figueroa BE |
| Citation(s) |
33076374 |
| |
| Submission date |
Jul 24, 2020 |
| Last update date |
Oct 26, 2020 |
| Contact name |
Blanca Estela Barrera-Figueroa |
| E-mail(s) |
blanca_barrera_f@hotmail.com
|
| Phone |
2878718585
|
| Organization name |
Universidad del Papaloapan
|
| Department |
Instituto de Biotecnología
|
| Lab |
Biotecnología Vegetal
|
| Street address |
Av. Circuito Central 200
|
| City |
Tuxtepec |
| State/province |
Oaxaca |
| ZIP/Postal code |
68301 |
| Country |
Mexico |
| |
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| Platforms (2) |
| GPL18523 |
Illumina HiSeq 2500 (Zea mays subsp. mays) |
| GPL28922 |
Illumina HiSeq 2500 (Zea mays subsp. parviglumis) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA648350 |
| SRA |
SRP273423 |
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