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Series GSE154572 Query DataSets for GSE154572
Status Public on Jul 17, 2020
Title Loss of PRC2 subunits primes lineage choice during exit of pluripotency
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Mouse embryoid body differentiation with single-cell analyses of timepoints 0, 4, 7 and 10. Bulk-RNA seq of directed differentiation of mouse embryonic stem cells from day 0, 5hr, 24hr and 48hrs.
 
Overall design Mouse embryoid body differentiation with single-cell analyses of timepoints 0, 4, 7 and 10. Bulk-RNA seq of directed differentiation of mouse embryonic stem cells from day 0, 5hr, 24hr and 48hrs.
 
Contributor(s) Loh CH, Perino M, Bark MR, Veenstra GJ, Genesen SV
Citation(s) 34848733
Submission date Jul 16, 2020
Last update date Jan 07, 2022
Contact name Chet H Loh
E-mail(s) loh.chet.hong@gmail.com
Phone 0627148007
Organization name RIMLS
Street address Geert Grooteplein Zuid 28
City Nijmegen
ZIP/Postal code 6525GA
Country Netherlands
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (88)
GSM4674742 E14_EB_D10_WT
GSM4674743 E14_EB_D10_MTF2null
GSM4674744 E14_EB_D10_JARID2null
Relations
BioProject PRJNA646712
SRA SRP272248

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE154572_RAW.tar 24.1 Mb (http)(custom) TAR (of TXT)
GSE154572_combinedcounts_alllines.txt.gz 5.5 Mb (ftp)(http) TXT
GSE154572_counts_UMIs_singlecell.txt.gz 13.8 Mb (ftp)(http) TXT
GSE154572_counts_bulk_rna_seq_endoderm.txt.gz 1.7 Mb (ftp)(http) TXT
GSE154572_counts_bulk_rna_seq_mesoderm.txt.gz 1.6 Mb (ftp)(http) TXT
GSE154572_meta_data_singlecell.txt.gz 86.6 Kb (ftp)(http) TXT
GSE154572_sequences_singlecell_cellbarcodes.tab.gz 2.2 Kb (ftp)(http) TAB
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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