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| Status |
Public on Jan 15, 2021 |
| Title |
Gene expression analysis of two strains of Trametes versicolor |
| Organism |
Trametes versicolor |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Illumina HiSeq technology was used to generate mRNA profiles from two strains of Trametes versicolor. Mycelium of Trametes versicolor BRFM1218 and Trametes versicolor 1956-1252 were harvested after 2 and 4 weeks of incubation on 4% malt agar medium and used for total RNA extraction. Paired-end reads of 100 bp were generated and aligned to Trametes versicolor (https://mycocosm.jgi.doe.gov/Trave1/Trave1.home.html) reference transcripts using CLC Genomics Workbench 7.5.1.
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| Overall design |
mRNA profiles from from two strains of Trametes versicolor (BRFM1218 and 1956-1252) were generated by Illumina HiSeq2000 sequencing (2x100bp). Three biological replicates were sequenced from mycelium grown for 2 or 4 weeks on 4% malt agar medium.
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| |
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| Contributor(s) |
Deroy A, Gelhaye E, Kohler A |
| Citation(s) |
33450403 |
| |
| Submission date |
Jul 09, 2020 |
| Last update date |
Apr 16, 2021 |
| Contact name |
Annegret Kohler |
| E-mail(s) |
annegret.kohler@inrae.fr
|
| Phone |
+33 (0)383 394072
|
| Organization name |
INRAE
|
| Department |
UMR 1136
|
| Lab |
Interactions Arbres/Micro-organismes
|
| Street address |
Centre INRAE Grand Est Nancy
|
| City |
Champenoux |
| ZIP/Postal code |
54280 |
| Country |
France |
| |
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| Platforms (1) |
| GPL21933 |
Illumina HiSeq 2000 (Trametes versicolor) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA645074 |
| SRA |
SRP271072 |
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