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Series GSE154047 Query DataSets for GSE154047
Status Public on Aug 18, 2020
Title Single Cell RNA Profiling Reveals Adipocyte to Macrophage Signaling Sufficient to Enhance Thermogenesis
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Adipocytes deficient in fatty acid synthase (iAdFASNKO) emit signals that mimic cold exposure to enhance the appearance of thermogenic beige adipocytes in mouse inguinal white adipose tissues (iWAT). Both cold- and iAdFASNKO-induced iWAT “browning” pathways upregulate the sympathetic nerve fiber (SNF) modulator Nrg4 and activate SNFs adjacent to beige adipocytes. Adipocyte cAMP/protein kinase A signaling is necessary for beige adipocyte appearance, as we show here it is blocked in Gsa deficient cold exposed or iAdFASNKO mice. Surprisingly however, denervation of iWAT failed to block adipocyte browning in iAdFASNKO mice, as it does in cold-exposed mice. Similarly, Nrg4 deficiency markedly reduced iWAT UCP1 in the cold, but not in double FASN/Nrg4 KO mice. Single-cell transcriptomic analysis of iWAT stromal cells revealed increased macrophages displaying gene expression signatures of the alternately activated type in iAdFASNKO mice, and their depletion abrogated iWAT beiging. Altogether, these findings reveal divergent cellular pathways are sufficient to cause adipocyte browning. Importantly, adipocyte signaling to enhance alternatively activated macrophages in iAdFASNKO mice is associated with enhanced adipose thermogenesis independent of the sympathetic neuron involvement this process requires in the cold.
 
Overall design We pooled SVF cells from iWAT from 7 control (C57BL/6) and 8 iAdFASNKO mice. The cells were separate into immune and non-immune cells via magnetic cell sorting. Single cell library preparation was performed using the 10X Genomics Single Cell 3’ v3 according to the manufacturer’s instructions.
 
Contributor(s) Henriques F, Bedard AH, Lifshitz LM, Czech MP
Citation(s) 32755590
Submission date Jul 08, 2020
Last update date Aug 18, 2020
Contact name Michael Czech
E-mail(s) Michael.Czech@umassmed.edu
Organization name University of Massachusetts Medical School
Department Program in Molecular Medicine
Street address 373 Plantation Street
City Worcester
State/province Massachusetts
ZIP/Postal code 01605
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (4)
GSM4663163 Lin- control
GSM4663164 Lin+ control
GSM4663165 Lin- iAdFASNKO
Relations
BioProject PRJNA644925
SRA SRP270982

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE154047_KO_barcodes.tsv.gz 56.6 Kb (ftp)(http) TSV
GSE154047_KO_cloupe.cloupe.gz 84.1 Mb (ftp)(http) CLOUPE
GSE154047_KO_features.tsv.gz 272.8 Kb (ftp)(http) TSV
GSE154047_KO_matrix.mtx.gz 60.6 Mb (ftp)(http) MTX
GSE154047_WT_barcodes.tsv.gz 38.7 Kb (ftp)(http) TSV
GSE154047_WT_cloupe.cloupe.gz 81.7 Mb (ftp)(http) CLOUPE
GSE154047_WT_features.tsv.gz 272.8 Kb (ftp)(http) TSV
GSE154047_WT_matrix.mtx.gz 57.6 Mb (ftp)(http) MTX
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Raw data are available in SRA
Processed data are available on Series record

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