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Series GSE154025 Query DataSets for GSE154025
Status Public on Jul 08, 2020
Title Splicing factor Ybx1 maintains persistent Jak2-mutated neoplasms via Mknk1-ERK-signaling persistent clones in Jak2-mutated neoplasms
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Inactivation of Ybx1 results in RNA mis-splicing, retained intron enrichment and disruption of the transcriptional and post-translational control of extracellular signal-regulated kinase (ERK) signaling
 
Overall design Examination of Ybx1 DNAbinding sites in BaF3 V617Fcells
 
Contributor(s) Jayavelu AK, Mann M, Heidel FH
Citation(s) 33239784
Submission date Jul 08, 2020
Last update date Dec 03, 2020
Contact name Sung-Huan Yu
E-mail(s) shyu@biochem.mpg.de
Organization name Max Planck Institute
Street address Am Klopferspitz 18
City Planegg
ZIP/Postal code 81251
Country Germany
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (6)
GSM4662099 BaF3_JAK2VF_YBX1 _1 (ChIP rep 1)
GSM4662100 BaF3_JAK2VF_YBX1 _2 (ChIP rep 2)
GSM4662101 BaF3_JAK2VF_YBX1 _3 (ChIP rep 3)
Relations
BioProject PRJNA644892
SRA SRP270934

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE154025_BaF3_JAK2VF-ybx1_vs_input_1_peak.bed.gz 96.5 Kb (ftp)(http) BED
GSE154025_BaF3_JAK2VF-ybx1_vs_input_1_peak.txt.gz 201.4 Kb (ftp)(http) TXT
GSE154025_BaF3_JAK2VF-ybx1_vs_input_2_peak.bed.gz 36.6 Kb (ftp)(http) BED
GSE154025_BaF3_JAK2VF-ybx1_vs_input_2_peak.txt.gz 74.1 Kb (ftp)(http) TXT
GSE154025_BaF3_JAK2VF-ybx1_vs_input_3_peak.bed.gz 39.6 Kb (ftp)(http) BED
GSE154025_BaF3_JAK2VF-ybx1_vs_input_3_peak.txt.gz 82.2 Kb (ftp)(http) TXT
GSE154025_RAW.tar 3.7 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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