NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE153644 Query DataSets for GSE153644
Status Public on Jul 13, 2020
Title Identification of Scarlet Runner Bean WOX9-like binding sites in Scarlet Runner Bean seeds during seed development
Organism Phaseolus coccineus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To dissect the gene regulatory networks operating during Scarlet Runner Bean seed development, we identified the binding sites genome-wide for transcription factor in Scarlet Runner Bean seeds during seed development using ChIP-seq
 
Overall design Identification of Scarlet Runner Bean WOX9-like binding sites in Scarlet Runner Bean seeds during seed development. ChIP and total chromatin controls (input) were obtained for two replicates. Samples were sequenced using the Illumina HiSeq2500 and NovaSeq 6000 platform.
 
Contributor(s) Goldberg RB, Apuya N, Chen M
Citation(s) 33536344
Submission date Jul 01, 2020
Last update date Apr 20, 2021
Contact name Bob Goldberg
E-mail(s) bobglab@mcdb.ucla.edu
Phone 310-825-3270
Organization name University of California, Los Angeles
Department Molecular, Cell and Developmental Biology
Street address 610 Charles E Young Drive East
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platforms (2)
GPL18674 Illumina HiSeq 2000 (Phaseolus coccineus)
GPL28802 Illumina NovaSeq 6000 (Phaseolus coccineus)
Samples (4)
GSM4648568 glob-micropylar-WOX9-like-ChIP replicate 1
GSM4648569 glob-micropylar-WOX9-like-ChIP replicate 2
GSM4648570 glob-micropylar-Input replicate 1
Relations
BioProject PRJNA643538
SRA SRP269578

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE153644_RAW.tar 1.6 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap