|
| Status |
Public on Jul 13, 2020 |
| Title |
Identification of Scarlet Runner Bean WOX9-like binding sites in Scarlet Runner Bean seeds during seed development |
| Organism |
Phaseolus coccineus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
To dissect the gene regulatory networks operating during Scarlet Runner Bean seed development, we identified the binding sites genome-wide for transcription factor in Scarlet Runner Bean seeds during seed development using ChIP-seq
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| Overall design |
Identification of Scarlet Runner Bean WOX9-like binding sites in Scarlet Runner Bean seeds during seed development. ChIP and total chromatin controls (input) were obtained for two replicates. Samples were sequenced using the Illumina HiSeq2500 and NovaSeq 6000 platform.
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| |
|
| Contributor(s) |
Goldberg RB, Apuya N, Chen M |
| Citation(s) |
33536344 |
| |
| Submission date |
Jul 01, 2020 |
| Last update date |
Apr 20, 2021 |
| Contact name |
Bob Goldberg |
| E-mail(s) |
bobglab@mcdb.ucla.edu
|
| Phone |
310-825-3270
|
| Organization name |
University of California, Los Angeles
|
| Department |
Molecular, Cell and Developmental Biology
|
| Street address |
610 Charles E Young Drive East
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL18674 |
Illumina HiSeq 2000 (Phaseolus coccineus) |
| GPL28802 |
Illumina NovaSeq 6000 (Phaseolus coccineus) |
|
| Samples (4)
|
| GSM4648568 |
glob-micropylar-WOX9-like-ChIP replicate 1 |
| GSM4648569 |
glob-micropylar-WOX9-like-ChIP replicate 2 |
| GSM4648570 |
glob-micropylar-Input replicate 1 |
|
| Relations |
| BioProject |
PRJNA643538 |
| SRA |
SRP269578 |
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