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Series GSE153521 Query DataSets for GSE153521
Status Public on Jun 30, 2020
Title Integrative profiling of early host chromatin accessibility responses in human neutrophils with sensitive pathogen detection [RNA-seq]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary ATAC-seq and RNA-seq of primary human neutrophils challenged with multiple pathogen mimicking ligands and whole organisms.
 
Overall design RNA-seq profiles of neutrophils in response to various pathogen ligands and whole organisms
 
Contributor(s) Yang S, Ram Mohan N, Thair S
Citation(s) 34145026
Submission date Jun 29, 2020
Last update date Aug 11, 2021
Contact name Samuel Yang
Organization name Stanford University School of Medicine
Department Emergency Medicine
Street address 1201 Welch Road
City Palo Alto
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (8)
GSM4646431 EC 1h challenge rep 1
GSM4646432 EC 1h challenge rep 2
GSM4646433 EC 4h challenge rep 1
This SubSeries is part of SuperSeries:
GSE153522 Integrative profiling of early host chromatin accessibility responses in human neutrophils with sensitive pathogen detection
Relations
BioProject PRJNA642891
SRA SRP269266

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE153521_Raw_counts_for_each_replicate.txt.gz 336.3 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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