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Series GSE153520 Query DataSets for GSE153520
Status Public on Jun 30, 2020
Title Integrative profiling of early host chromatin accessibility responses in human neutrophils with sensitive pathogen detection [ATAC-seq]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ATAC-seq and RNA-seq of primary human neutrophils challenged with multiple pathogen mimicking ligands and whole organisms.
Overall design ATAC-seq profiles of neutrophils in response to various pathogen ligands and whole organisms

**Please note that the processed *bed files were replaced on March 1, 2021**
Contributor(s) Yang S, Ram Mohan N, Thair S
Citation(s) 34145026
BioProject PRJNA636835
Submission date Jun 29, 2020
Last update date Aug 11, 2021
Contact name Samuel Yang
Organization name Stanford University School of Medicine
Department Emergency Medicine
Street address 1201 Welch Road
City Palo Alto
State/province CA
ZIP/Postal code 94305
Country USA
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (76)
GSM4646355 BGP challenge Donor 1-1
GSM4646356 BGP challenge Donor 1-2
GSM4646357 Control Donor 1-1
This SubSeries is part of SuperSeries:
GSE153522 Integrative profiling of early host chromatin accessibility responses in human neutrophils with sensitive pathogen detection
SRA SRP265675

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE153520_BGP_Merged_peaks_coverage.bed.gz 246.1 Kb (ftp)(http) BED
GSE153520_CL_Merged_peaks_coverage.bed.gz 311.2 Kb (ftp)(http) BED
GSE153520_EC_1h_peaks_coverage.bed.gz 227.5 Kb (ftp)(http) BED
GSE153520_EC_4h_peaks_coverage.bed.gz 141.1 Kb (ftp)(http) BED
GSE153520_FLAG_Donor_Merged_peaks_coverage.bed.gz 438.0 Kb (ftp)(http) BED
GSE153520_HMGB_Merged_peaks_coverage.bed.gz 545.0 Kb (ftp)(http) BED
GSE153520_LPS_Merged_peaks_coverage.bed.gz 262.9 Kb (ftp)(http) BED
GSE153520_LTA_Merged_peaks_coverage.bed.gz 279.0 Kb (ftp)(http) BED
GSE153520_R848_Merged_peaks_coverage.bed.gz 434.4 Kb (ftp)(http) BED
GSE153520_SA_peaks_coverage.bed.gz 127.5 Kb (ftp)(http) BED
GSE153520_WB-SA_peaks_coverage.bed.gz 56.8 Kb (ftp)(http) BED
GSE153520_noEC_1h_peaks_coverage.bed.gz 161.5 Kb (ftp)(http) BED
GSE153520_noEC_4h_peaks_coverage.bed.gz 109.2 Kb (ftp)(http) BED
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Raw data are available in SRA
Processed data are available on Series record

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