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Status |
Public on Jan 04, 2021 |
Title |
Mapping the transcriptional response to auxin in differentiated endodermal cells |
Organism |
Arabidopsis thaliana |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
Here we show that differntiated endodermal cells have a distinct transcriptional response to auxin treatment. We perform a time serie of 10µM NAA treatment and sample at t=0, 2, 4, 8, 16 and 24hrs after NAA treatment. For the time series we compared roots of the solitairy root 1 (slr-1) mutant to the CASP1::shy2-2/slr-1 double mutant. We also provide RNAseq data of slr-1, CASP1::shy2-2 and CASP1::shy2-2/slr-1 at t=0
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Overall design |
Examination of transcriptional changes in slr-1 and CASP1::shy2-2/slr-1 mutants after NAA (10µM) treatment.
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Contributor(s) |
Ursache R, Schmid-Siegert E, Pradervand S, Calderon Copete S, Geldner N, Vermeer J |
Citation(s) |
33686223 |
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Submission date |
Jun 29, 2020 |
Last update date |
Apr 06, 2021 |
Contact name |
Sylvain Pradervand |
E-mail(s) |
Sylvain.Pradervand@unil.ch
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Phone |
+41 21 692 39 08
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Organization name |
UNI Lausanne
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Department |
CIG
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Lab |
DNA Array Facility
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Street address |
Genopode
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City |
Lausanne |
ZIP/Postal code |
1015 |
Country |
Switzerland |
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Platforms (1) |
GPL17639 |
Illumina HiSeq 2500 (Arabidopsis thaliana) |
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Samples (36)
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Relations |
BioProject |
PRJNA642797 |
SRA |
SRP269194 |