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Series GSE153478 Query DataSets for GSE153478
Status Public on Jan 04, 2021
Title Mapping the transcriptional response to auxin in differentiated endodermal cells
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Here we show that differntiated endodermal cells have a distinct transcriptional response to auxin treatment. We perform a time serie of 10µM NAA treatment and sample at t=0, 2, 4, 8, 16 and 24hrs after NAA treatment. For the time series we compared roots of the solitairy root 1 (slr-1) mutant to the CASP1::shy2-2/slr-1 double mutant. We also provide RNAseq data of slr-1, CASP1::shy2-2 and CASP1::shy2-2/slr-1 at t=0
 
Overall design Examination of transcriptional changes in slr-1 and CASP1::shy2-2/slr-1 mutants after NAA (10µM) treatment.
 
Contributor(s) Ursache R, Schmid-Siegert E, Pradervand S, Calderon Copete S, Geldner N, Vermeer J
Citation(s) 33686223
Submission date Jun 29, 2020
Last update date Apr 06, 2021
Contact name Sylvain Pradervand
E-mail(s) Sylvain.Pradervand@unil.ch
Phone +41 21 692 39 08
Organization name UNI Lausanne
Department CIG
Lab DNA Array Facility
Street address Genopode
City Lausanne
ZIP/Postal code 1015
Country Switzerland
 
Platforms (1)
GPL17639 Illumina HiSeq 2500 (Arabidopsis thaliana)
Samples (36)
GSM4644909 slr-1_control_rep1
GSM4644910 slr-1_16hr_10µMNAA_rep1
GSM4644911 slr-1_16hr_10µMNAA_rep3
Relations
BioProject PRJNA642797
SRA SRP269194

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE153478_RAW.tar 4.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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